2024-05-19 16:59:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_040360670 1705 bp mRNA linear VRT 25-MAR-2021 DEFINITION PREDICTED: Rana temporaria ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), transcript variant X2, mRNA. ACCESSION XM_040360670 VERSION XM_040360670.1 DBLINK BioProject: PRJNA714106 KEYWORDS RefSeq. SOURCE Rana temporaria (common frog) ORGANISM Rana temporaria Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Ranidae; Rana; Rana. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_053495.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Rana temporaria Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1705 /organism="Rana temporaria" /mol_type="mRNA" /db_xref="taxon:8407" /chromosome="7" gene 1..1705 /gene="ST6GALNAC5" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns" /db_xref="GeneID:120946006" CDS 23..817 /gene="ST6GALNAC5" /codon_start=1 /product="alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 isoform X2" /protein_id="XP_040216604.1" /db_xref="GeneID:120946006" /translation="
MQVDCVHSFLLMRLTPLKMHCKSCALVTSSGHLLGSKLGNKIDQTECVIRMNDAPTRGYGQDVGNKTSLRVIAHSSIQRILRNRNELLNMSQGTVFIFWGPSSYMRRDGKGLVFNNLQLINKILPRLKVHTITRHKMLHFDELFKKETGKDRKISNTWLSTGWFTMSIALELCNTINVYGMVPPDFCRSPNHTTVPYHYYELMGPDECTMYISHERGRKGSHHRFITEKKVFANWARTFNINFFQPDWKPEAHNGKHLLGKPMF"
misc_feature 50..625 /gene="ST6GALNAC5" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:425864" ORIGIN
tgcttaggtgggagagagagagatgcaggtggattgtgttcattcctttttgctaatgaggttaacgcccctgaaaatgcactgcaagagttgtgcgctggtgaccagctccgggcacctgctgggaagtaaactgggtaataagattgaccagacggagtgcgtaatacgtatgaatgatgctcccacacggggctacggacaggacgttggcaacaaaacgagcctgagagtgattgcgcactccagcatccagcggatattgaggaatcgcaatgaactgctaaacatgagtcaaggcaccgtcttcatcttctggggccccagcagctacatgcggagggacggcaagggactggtgttcaataacctgcagctcatcaacaagatactacctcgattaaaagtgcacaccatcacccgccacaagatgctgcacttcgatgaacttttcaagaaggagacgggaaaggacaggaagatctcaaatacttggctcagtaccggatggttcaccatgtccatagcattagaactctgcaatacaattaatgtgtacgggatggttcctccagatttctgcaggtctcccaaccacacgacggtgccctaccattattatgaactgatgggaccagacgagtgtacaatgtacatctctcacgagcgaggcagaaaaggaagtcaccatcgcttcatcacagagaaaaaagtttttgccaactgggcacggacctttaatatcaactttttccaaccagactggaaaccggaggcacacaatggaaaacacttacttgggaaaccaatgttctaaacagagggagactcatgatagacgccatttggtctccagtagtatctgtcataagacctttcctatcaatgaactaggaaatagaggtgctccaggttaatagcgcattcatagcctgaaaaaattggttatccttttagtatgtctactacagttctttacaggtgttggctgcacattgaagaagctttccaagaaagagtcaaactctctccagttacacacaaaggttctactgtgtacaattcttttaatattaactttcacagaaaaagataaaacttggtgagtccgagcccttttctggaatcatctatggattggttattttaaaagacaagttcacttttaacctaaaatcgattaattcactctacccagccacctaatgtagaaccccccactctgatgcgtatgcacctctctgtgacagtggtggactcctccagtgtttagtgtttttggcctgacatgctttaagagtagagatgttacaagtatggccccattcaagtctagagggagtcaatgcttaggcatacgcagcaacacagtagattttaggtcaaggcactaaacaccagaggagaccatcaccaccatgaagaggtaagtaaaaatctgaaatggggggctctagattggattgggtcgctgggaagggtggttaattatgtaaaagcctacaagtcctttaacctctttgagctcacaatctgtcttaacgttgcccacgatgccacatgctatagacctgataataaccattccctctgagaactggaggttaaagtttgtgtgtcattagacaaaattagtctttcaccttcaggctgcagtgccatctatttgattgtgtaatcgttagatacaattacaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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