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2024-05-19 15:40:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_039486326            3691 bp    mRNA    linear   VRT 13-FEB-2021
DEFINITION  PREDICTED: Mauremys reevesii ST6 N-acetylgalactosaminide
            alpha-2,6-sialyltransferase 5 (ST6GALNAC5), transcript variant X4,
            mRNA.
ACCESSION   XM_039486326
VERSION     XM_039486326.1
DBLINK      BioProject: PRJNA699301
KEYWORDS    RefSeq.
SOURCE      Mauremys reevesii (Reeves's turtle)
  ORGANISM  Mauremys reevesii
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira;
            Testudinoidea; Geoemydidae; Geoemydinae; Mauremys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052630.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Mauremys reevesii Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3691
                     /organism="Mauremys reevesii"
                     /mol_type="mRNA"
                     /isolate="NIE-2019"
                     /db_xref="taxon:260615"
                     /sex="female"
                     /tissue_type="muscle"
                     /country="China: Wuhu"
                     /linkage_group="8"
     gene            1..3691
                     /gene="ST6GALNAC5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:120370958"
     CDS             3..803
                     /gene="ST6GALNAC5"
                     /codon_start=1
                     /product="alpha-N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 5 isoform X3"
                     /protein_id="XP_039342260.1"
                     /db_xref="GeneID:120370958"
                     /translation="
MTWGRSLPVEGGVQVWKPLKMHCKSCALVTSSGHLLGSKQGNRIDQTECVIRMNDAPTRGYGKDVGNKTSLRVIAHSSIQRILRNRNELLNMSQGTVFIFWGPSSYMRRDGKGLVYNNLQLMNQILPQLKVYMVSRHKMLQFDDLFKRETGKDRKISNTWLSTGWFTMTIALELCDRINVYGMVPPDFCRDPNHSSVPYHYYEPLGPDECTMYISHERGRKGSHHRFITEKRVFENWARTFNIHFFQPDWKPESLTINHLEIKPVF"
     misc_feature    42..611
                     /gene="ST6GALNAC5"
                     /note="Glycosyltransferase family 29 (sialyltransferase);
                     Region: Glyco_transf_29; pfam00777"
                     /db_xref="CDD:425864"
ORIGIN      
ttatgacttgggggcgcagcctgccagttgaaggaggagtccaggtatggaagcctttgaaaatgcactgcaagagttgtgcactggtaaccagttctggacaccttttgggaagcaaacaaggcaacagaatcgaccagactgagtgtgtaatacgaatgaacgatgcacccactcgaggttatggaaaagatgttggaaacaaaactagccttcgagtcattgcacattctagtatccagagaattctgcgaaaccgcaatgaactgttaaatatgagtcaaggtactgtgtttatcttctggggtcccagcagctatatgagacgagatggaaaaggtttggtttataataatctgcaattgatgaatcagatactacctcaattaaaagtatatatggtttctcggcacaagatgcttcaatttgacgacctcttcaaacgggaaactggcaaagacaggaagatatccaacacttggcttagcacaggatggttcacaatgactatcgcattagaactctgtgacaggataaatgtttatggcatggtgccaccagatttctgcagggatcctaatcattcttcagtaccttatcattattatgaacctttgggacctgatgaatgtacaatgtacatttcacacgagcggggacgaaagggcagccatcatcgttttatcacagagaaacgagtgtttgagaactgggcacggacattcaatattcacttttttcaaccagactggaaaccagaatcacttacgataaatcacctggagattaaacccgtgttctgaggaatgaatgcacaagactgcaatcacaatcacctactgtatcaggcttcagggtattgaacctcgcagaagagcaaggcaatctaaaaaagcaaggttaacaggctttgtgggtggaaaccgctacagtattcaggaagttcttgcgaaggaatacataaaaggacattttgtatccaactgtattataatccaataattaacgttgtccagccagctcacctcctgtataagtatgtgatctgtaaaaagcaacttgactatcattagtgggatgtttaattcattatagttttttaaagcacgttgccactgaattttcatagtgaaaacttaaaatacttatttaatgggggtttttatgcaggctaggccagtatttttctaattcacaattatgtgattatctttcataagccttcaaatccaaaatgtattgctggtcgtatagaaaggcctagcttcttgtttataagttttccctttgaaaaatatgattctattgagcatgtaattaatatttgatctggaaatgttgtgtttctttttaaatggctgggctccactccaaggtagcgtctttaatggcaagaaaattcccatgtgaagatcgtgtgtgagatgctaccgtctgacatttcacattaatatgaaaatggcaaagaaaattccttttgatgtaaatgtgcacttgcagctatgatgtcaggctgctctttcttaatggagatggggtagagggcagggcaaggtttactagattgcatcctgggatattgccaccgtctgtggcactgtgcatataattaaaactgagaaatgagaggggccacttcaggaggtcagaggactctcagtaactccattattctgtttggccttttatacttcccactaactctgtaatcctcccatttccagctgcaatctgcagacagcctacaatggattaagagtatatgaactgatgccttctcctacgataggtacttatgtgatgttcctaagtctacaccaaccagcagaatagaaattgtatggcatcagtcacatgagatacaacgttgccattccaaactctctcccatccattcccccagtaactttcttctcatagatcctggatcacagagaggttaggagcctgagtggattgagttcagtggttctgggactgtccccttaaggacaaaaagtagcagaacatggcaggttcttcatgatgcacatgtggctagttcctgtgaattacaggggtggacactaatagttcgattatatggaaattcacagtgggtcttattcaattataatggcttgtgcataaagatggatttcatttccagtgttttgtcctttcaccttgcaactactaaaactcaatcacttcttcaaagtaattgcagggagtaatttatttattacatgaatgctataattcaggctataaagctacttcattgtacaaagagtgaaaccaaagctattgttaatggttgatcttaaaatgtcaaaagtcaggaagctcaaaagtgaggtgcaatacaccgcggcagtggtacacaatttgcccaaattcacacctgatgagagtagctgcacctcctgtggaagtatctgcattgtactcagccaggacataaccagtggtggcgtttggttagaaaatgggtgtaatgggtcatatagcataatttgcaccaatttaagattctgtgagaatctaaactgtaactgcaaagaggtggaagggatgcagcaagtaggatagagcagtccttctacttggtctcagttggtattttcccccctgctatgtaccccttccatctgcaaccccctgaatgcaaaactagtacaagttacactacttggccaattatttaaccccatgcgctggccaatttccagctgatgtttaatggccaccatttagggaaggagttctcaaacttcattgcaccatgaccctcttctgacaacaaaaattactacacaaccccataagcttgagccctgctgccccggatgtgggggccaaagcccgagccccatcacctgaggtgggagtggggtcaaagccaaggcaaggggctgtaacctgagccctgccacccagggctgaagctctcaggcttcagcttctgtcctaggccatgcggctcggggtgatggggctcagacttcagctttggccctgggccccagcaaggctaagccagccctcataaccccattaaaacggggtcgtgacccactttggggttctgactcccaatttgagaactgtggatttagcatgagcttcccaaccctggtagacagccacacactagctcaagttgaggtaccccgctaacaatgagcaccgaggctgttgtggcacaaacagtgccatgggataaccacctgagtacaagccctcttgatactcacacagaccccggatccctaagcaggtgactagcctgtgtcataatgtccacaccgctattttcagcacagtagcttgagcggaggtagcatggtcccagctgccatgaagacatatccttagtgactgtgttttattcctcccatgttatgtcatggcaccttagaaagaaaagaaaggattttaaactaatgcctatgtgaagtgccatttcaccctggctactggtggcatatccagcacatagtgctaaaattggtgaactttagtcaaattgatttacagcgcatgttaactgtcactgtaaaagattttgttatagattacaatggctcctaggctgccacagtgacctgtcttttagttactttattattggtttaacgctaaaaggattttggacatggtaaaatatagcgctgttagggaacgtctacactgcaaaaaagaaact
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]