2024-05-19 15:40:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039486326 3691 bp mRNA linear VRT 13-FEB-2021 DEFINITION PREDICTED: Mauremys reevesii ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), transcript variant X4, mRNA. ACCESSION XM_039486326 VERSION XM_039486326.1 DBLINK BioProject: PRJNA699301 KEYWORDS RefSeq. SOURCE Mauremys reevesii (Reeves's turtle) ORGANISM Mauremys reevesii Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052630.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mauremys reevesii Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3691 /organism="Mauremys reevesii" /mol_type="mRNA" /isolate="NIE-2019" /db_xref="taxon:260615" /sex="female" /tissue_type="muscle" /country="China: Wuhu" /linkage_group="8" gene 1..3691 /gene="ST6GALNAC5" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:120370958" CDS 3..803 /gene="ST6GALNAC5" /codon_start=1 /product="alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 isoform X3" /protein_id="XP_039342260.1" /db_xref="GeneID:120370958" /translation="
MTWGRSLPVEGGVQVWKPLKMHCKSCALVTSSGHLLGSKQGNRIDQTECVIRMNDAPTRGYGKDVGNKTSLRVIAHSSIQRILRNRNELLNMSQGTVFIFWGPSSYMRRDGKGLVYNNLQLMNQILPQLKVYMVSRHKMLQFDDLFKRETGKDRKISNTWLSTGWFTMTIALELCDRINVYGMVPPDFCRDPNHSSVPYHYYEPLGPDECTMYISHERGRKGSHHRFITEKRVFENWARTFNIHFFQPDWKPESLTINHLEIKPVF"
misc_feature 42..611 /gene="ST6GALNAC5" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:425864" ORIGIN
ttatgacttgggggcgcagcctgccagttgaaggaggagtccaggtatggaagcctttgaaaatgcactgcaagagttgtgcactggtaaccagttctggacaccttttgggaagcaaacaaggcaacagaatcgaccagactgagtgtgtaatacgaatgaacgatgcacccactcgaggttatggaaaagatgttggaaacaaaactagccttcgagtcattgcacattctagtatccagagaattctgcgaaaccgcaatgaactgttaaatatgagtcaaggtactgtgtttatcttctggggtcccagcagctatatgagacgagatggaaaaggtttggtttataataatctgcaattgatgaatcagatactacctcaattaaaagtatatatggtttctcggcacaagatgcttcaatttgacgacctcttcaaacgggaaactggcaaagacaggaagatatccaacacttggcttagcacaggatggttcacaatgactatcgcattagaactctgtgacaggataaatgtttatggcatggtgccaccagatttctgcagggatcctaatcattcttcagtaccttatcattattatgaacctttgggacctgatgaatgtacaatgtacatttcacacgagcggggacgaaagggcagccatcatcgttttatcacagagaaacgagtgtttgagaactgggcacggacattcaatattcacttttttcaaccagactggaaaccagaatcacttacgataaatcacctggagattaaacccgtgttctgaggaatgaatgcacaagactgcaatcacaatcacctactgtatcaggcttcagggtattgaacctcgcagaagagcaaggcaatctaaaaaagcaaggttaacaggctttgtgggtggaaaccgctacagtattcaggaagttcttgcgaaggaatacataaaaggacattttgtatccaactgtattataatccaataattaacgttgtccagccagctcacctcctgtataagtatgtgatctgtaaaaagcaacttgactatcattagtgggatgtttaattcattatagttttttaaagcacgttgccactgaattttcatagtgaaaacttaaaatacttatttaatgggggtttttatgcaggctaggccagtatttttctaattcacaattatgtgattatctttcataagccttcaaatccaaaatgtattgctggtcgtatagaaaggcctagcttcttgtttataagttttccctttgaaaaatatgattctattgagcatgtaattaatatttgatctggaaatgttgtgtttctttttaaatggctgggctccactccaaggtagcgtctttaatggcaagaaaattcccatgtgaagatcgtgtgtgagatgctaccgtctgacatttcacattaatatgaaaatggcaaagaaaattccttttgatgtaaatgtgcacttgcagctatgatgtcaggctgctctttcttaatggagatggggtagagggcagggcaaggtttactagattgcatcctgggatattgccaccgtctgtggcactgtgcatataattaaaactgagaaatgagaggggccacttcaggaggtcagaggactctcagtaactccattattctgtttggccttttatacttcccactaactctgtaatcctcccatttccagctgcaatctgcagacagcctacaatggattaagagtatatgaactgatgccttctcctacgataggtacttatgtgatgttcctaagtctacaccaaccagcagaatagaaattgtatggcatcagtcacatgagatacaacgttgccattccaaactctctcccatccattcccccagtaactttcttctcatagatcctggatcacagagaggttaggagcctgagtggattgagttcagtggttctgggactgtccccttaaggacaaaaagtagcagaacatggcaggttcttcatgatgcacatgtggctagttcctgtgaattacaggggtggacactaatagttcgattatatggaaattcacagtgggtcttattcaattataatggcttgtgcataaagatggatttcatttccagtgttttgtcctttcaccttgcaactactaaaactcaatcacttcttcaaagtaattgcagggagtaatttatttattacatgaatgctataattcaggctataaagctacttcattgtacaaagagtgaaaccaaagctattgttaatggttgatcttaaaatgtcaaaagtcaggaagctcaaaagtgaggtgcaatacaccgcggcagtggtacacaatttgcccaaattcacacctgatgagagtagctgcacctcctgtggaagtatctgcattgtactcagccaggacataaccagtggtggcgtttggttagaaaatgggtgtaatgggtcatatagcataatttgcaccaatttaagattctgtgagaatctaaactgtaactgcaaagaggtggaagggatgcagcaagtaggatagagcagtccttctacttggtctcagttggtattttcccccctgctatgtaccccttccatctgcaaccccctgaatgcaaaactagtacaagttacactacttggccaattatttaaccccatgcgctggccaatttccagctgatgtttaatggccaccatttagggaaggagttctcaaacttcattgcaccatgaccctcttctgacaacaaaaattactacacaaccccataagcttgagccctgctgccccggatgtgggggccaaagcccgagccccatcacctgaggtgggagtggggtcaaagccaaggcaaggggctgtaacctgagccctgccacccagggctgaagctctcaggcttcagcttctgtcctaggccatgcggctcggggtgatggggctcagacttcagctttggccctgggccccagcaaggctaagccagccctcataaccccattaaaacggggtcgtgacccactttggggttctgactcccaatttgagaactgtggatttagcatgagcttcccaaccctggtagacagccacacactagctcaagttgaggtaccccgctaacaatgagcaccgaggctgttgtggcacaaacagtgccatgggataaccacctgagtacaagccctcttgatactcacacagaccccggatccctaagcaggtgactagcctgtgtcataatgtccacaccgctattttcagcacagtagcttgagcggaggtagcatggtcccagctgccatgaagacatatccttagtgactgtgttttattcctcccatgttatgtcatggcaccttagaaagaaaagaaaggattttaaactaatgcctatgtgaagtgccatttcaccctggctactggtggcatatccagcacatagtgctaaaattggtgaactttagtcaaattgatttacagcgcatgttaactgtcactgtaaaagattttgttatagattacaatggctcctaggctgccacagtgacctgtcttttagttactttattattggtttaacgctaaaaggattttggacatggtaaaatatagcgctgttagggaacgtctacactgcaaaaaagaaact
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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