LOCUS       XM_038993399            4749 bp    mRNA    linear   VRT 13-JAN-2021
DEFINITION  PREDICTED: Salvelinus namaycush copper-transporting ATPase 1-like
            (LOC120047848), transcript variant X4, mRNA.
ACCESSION   XM_038993399
VERSION     XM_038993399.1
DBLINK      BioProject: PRJNA690826
KEYWORDS    RefSeq.
SOURCE      Salvelinus namaycush (lake trout)
  ORGANISM  Salvelinus namaycush
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salvelinus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052311.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Salvelinus namaycush Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4749
                     /organism="Salvelinus namaycush"
                     /mol_type="mRNA"
                     /isolate="Seneca"
                     /db_xref="taxon:8040"
                     /chromosome="5"
                     /sex="female"
                     /tissue_type="white muscle"
     gene            1..4749
                     /gene="LOC120047848"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 16 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:120047848"
     CDS             249..3914
                     /gene="LOC120047848"
                     /codon_start=1
                     /product="copper-transporting ATPase 1-like isoform X3"
                     /protein_id="XP_038849327.1"
                     /db_xref="GeneID:120047848"
                     /translation="

MTLKVKLSSVCLGVEGMTCASCVQSIEQRIGGLPGVVHIKVSLALKNASIIFDHSHHTPESLAEAVEDMGFDSILSDTTTASVVLTETQLVPIPALLTPEAQQEALTKLAQLQGVLEVQENKDQRGVSVTFIPSLISVVQLGEVVSSLAPLLEVPTSNSPTEETLVPAPATVSAPATSSQPQLVKMRIEGMVCLSCTTTIEGKIGKLKGVEKIKVVLDSQEATVLYLPYLITIDDIIGQIAKAGFKATPKSKPRPLQLSVSEMERLLSAALSPPPPVESSTEDSEVSTDSAQTTLRVKGMHCRSCVVNIQDNISKLAGVTSIEVLLESESASIHYDPEKVTVSGLQQAIEALPPGTFKTQPWSATSGGVSPTSTTPPPSSQAGISSTQPCYSQPLTATALIHIEGMTCGSCVQSIEGMLSQRKGVRSARVSLANHRGAFEFDPLLTQPEELREAIEDMGFDAFLPETNSLLTVPVISPPSPPSPAPVKEKELDSDPERGAAQCVKGAPNTLAKCFIQIGGMTCASCVANIERNLKNEHGIYSVLVALMASKAEVRYNPEVMDPLKIAEYVRELGFTASVMENYEGSDGSLELVVRGMTCASCVHKIESSLMKENGIVYASVALATNKAHIKYDPEVTGPRDVIKLIENMGFEASLVKKDRTGSHLDHSREITQWRKSFLVSLFFCVPVMGMMTYMIIVDHQISTSHQHNATTQDREHYHSTMFLERQLLPGLSIMNLISFLFCVPVQFIGGRYFYTHAYKALKHKTANMDVLIVLATSIAFTYSVVILMVAMIERAKVNPITFFDTPPMLFVFISLGRWLEQIAKSKTSEALSKLMSLQASEATVVTLNTDMSVLSEEQVDVELVQRGDVVRVVPGGKFPVDGRVIEGHSMADESLITGEAMPVTKKPGSTVIAGSINQNGSLLVSATHVGLDTTLSQIVKLVEEAQTSKAPIQQFADKISGYFVPFIVGVSLLTLFAWILIGFVDFPLVEKYFPGVYLAKSFHLNQGYDKSISKAEAVIRFAFQASITVLCIACPCSLGLATPTAVMVGTGVGAQNGILIKGGEPLEMAHKIQTVVFDKTGTITYGAPKVIQVKIVVEGNRMPRSRLLAIVGTAENNSEHPLGAAITKYCKQELGTESLGACTDFQAVPGCGIRCQVSNTETLLRQHQEDSDSEDNNQRNSVLVQISDSRTRPGSHPLIMDPQPLTLVQTASYVELIGNQ"

     misc_feature    288..464
                     /gene="LOC120047848"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(297..305,312..314)
                     /gene="LOC120047848"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    594..>1043
                     /gene="LOC120047848"
                     /note="copper-exporting P-type ATPase CopA; Region: copA;
                     PRK10671"
                     /db_xref="CDD:182635"
     misc_feature    801..992
                     /gene="LOC120047848"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(819..827,834..836)
                     /gene="LOC120047848"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1128..1304
                     /gene="LOC120047848"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1146..1154,1161..1163)
                     /gene="LOC120047848"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1455..1634
                     /gene="LOC120047848"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1464..1472,1479..1481)
                     /gene="LOC120047848"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1794..1982
                     /gene="LOC120047848"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1809..1817,1824..1826)
                     /gene="LOC120047848"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2019..2210
                     /gene="LOC120047848"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(2037..2045,2052..2054)
                     /gene="LOC120047848"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    2274..>3743
                     /gene="LOC120047848"
                     /note="Haloacid Dehalogenase-like Hydrolases; Region:
                     HAD_like; cl21460"
                     /db_xref="CDD:451251"
ORIGIN      

caatttgaaccgtgtgaagtcagcatgaaaaaccacacatcgacaacctaaacaagtaatgtcaatattcttgtattttagctacaagctgtagtacagcacttgttgcggcgataaggagatcgctagctagctagcaagccacgtttctcccccttagcatccgaatatcgtttttgcaacgtcaacaccctcctgcttaggtaactacatgattatcttcttgttaaacagactaaggatttacaatgacactgaaggtcaagctgagctcagtttgcctgggtgtagaagggatgacctgtgcttcctgtgttcagtctattgagcagcgcattgggggtcttcctggagtcgtacacatcaaggtgtctctggcgctgaagaatgccagcatcatcttcgaccacagtcatcacaccccagagtccctggctgaggccgtggaggacatggggtttgactctatcctctcagacactaccacagcttccgtggtcctcacggagacccagctggtccccatcccagcccttctcacccccgaagcacagcaggaggctctgaccaagctagctcagctccagggggtcctggaggtccaggagaacaaggaccagaggggggtgtccgttaccttcatcccttccctgattagtgtagtgcagcttggggaggtggttagtagcttggcccccctcctggaggtccctacatccaatagccctacagaggaaacacttgtcccagctcctgccacagtgtcagccccggccacatcctcacagcctcaactggtgaagatgcggatcgaaggcatggtctgtctgtcctgcaccaccaccatcgaagggaagattggcaagctcaaaggagttgagaaaatcaaagtggttctagactcccaggaggccacggttctctacctgccatacctcatcactatcgacgacatcatcggccagatcgccaaggctggcttcaaagccacacccaagtccaagccccgccccctgcagctgtctgtcagtgagatggagcggttgctaagcgctgcactatcacccccaccgccagtggaatcttccaccgaggattctgaggtgtctacagactcggcccagactaccctcagggtgaagggcatgcactgccgctcctgtgtggtaaacattcaggataacatctccaagctggctggggtgacctccatagaggtattgttggagagcgagagcgcctccatccactacgacccagagaaggtgactgtgtctgggctacagcaagccatcgaggccctgccaccggggacatttaaaacccaaccctggagcgctacctctggaggtgtaagccctacatccaccacaccaccaccgtcgtcccaggccggcatctcctccacccagccctgctacagccagcctctgacggccacggccttaatccatatagaggggatgacctgtgggtcctgtgttcagtccatcgaggggatgctgtctcagaggaagggggtgcggtcagccagggtgtcgctggccaatcacagaggggcgtttgagttcgaccctctcctcacccaaccagaggagctcagagaggccatagaggacatgggatttgatgccttcctgcctgaaaccaactccctgttgaccgtcccagttatcagtcccccctcgcccccttcccccgcccctgtcaaggagaaggagctggacagcgacccagagaggggcgctgcacagtgtgttaagggggccccaaacaccctcgctaaatgcttcatccagattggtggaatgacctgtgcatcctgtgtggccaacattgagaggaacctgaagaatgaacacggtatctactctgtgctggtggccctgatggctagtaaggctgaggtccgttataaccctgaggtgatggaccctctgaagatagccgagtatgtcagagagttgggcttcactgcttctgtcatggagaactatgagggttctgatggaagcctggaactggtggtcaggggaatgacgtgtgcctcctgcgttcacaaaatagagtccagcctgatgaaagagaacggtattgtctacgcctccgttgccctggcaaccaacaaagcccacatcaagtacgacccggaggtgacgggaccgagagacgtcatcaaactcatagagaacatgggcttcgaggcatctctggtgaagaaggatcgtacaggcagtcacctggaccacagcagagagatcacacaatggaggaagtcgttcctggtcagcctgttcttctgcgtcccagtcatggggatgatgacctacatgatcatagtagaccaccagatcagcacgtctcaccagcacaacgccaccacacaggaccgggaacactaccactccaccatgttcctggaaagacagctgctcccaggcctctccatcatgaacctgatctcattcctcttctgtgtccctgtacagtttattggcggacgctacttctacacccatgcctacaaggccctgaaacacaaaacggccaacatggacgtgctcatcgtgctggccacctccatagccttcacctactccgtggtcatcctcatggtcgccatgatagagagggcaaaggtcaaccccatcactttctttgacacgccccccatgctctttgtcttcatctccctggggcgctggctggagcagattgccaagagtaagacatcagaagctctgtccaagctgatgtccctccaggccagcgaggccacggtggtcacgctcaacacggacatgtctgtactcagtgaggagcaggtagatgtagagctggtccagagaggagacgtggtcagggtggtgcctggagggaagttccccgttgatgggagggtcatcgagggacacagcatggctgacgagtccctcatcacaggcgaggccatgccagtgactaagaagccaggcagcacagtgatagctggctctatcaaccagaacggctctctgctcgtcagtgctacacacgtgggcctggacacaaccctgtctcagatagttaaactagtggaggaggctcagacatctaaggctcccatccagcagtttgcagataagatcagtggttactttgtcccgttcatcgttggggtctctctcctcactctgttcgcctggatcctcattggctttgttgactttccactggtggaaaaatacttccctggggtgtatttagctaaatcattccacttaaatcagggctatgataagagcatctccaaggcagaagccgtgatcaggtttgccttccaggcctccatcacggtgctgtgtatcgcctgcccctgctctctgggcctggcaaccccgacagctgtgatggtgggcacgggggtgggtgctcagaacggtatcctcatcaagggaggggaaccactagagatggcacacaagatccagacagtggtgtttgataagacgggtaccatcacctacggagctcctaaagtcatccaggtgaagattgtagtggaggggaacaggatgcctcgctcccgtctgctggccatcgtagggaccgcagagaacaacagtgaacacccgctgggagctgccatcaccaagtactgtaaacaggagctgggtacggagtcccttggtgcgtgtactgacttccaggctgtgccaggctgtggaatacgatgccaggtcagtaacacagagaccctgctgagacaacatcaggaggacagtgacagtgaagacaacaaccaaagaaacagtgttctggtccagatcagtgactccagaacccggccaggatcacaccccctcatcatggacccgcagcctctcaccctggtgcagacagcatcctacgtggagttgatagggaaccagtaacctctctgtgtgtacctctatagccctggtgcagacagcatcctacgtggtgttgatagggaaccagtaacctctctgtgtgttcctctatagccctggtgcagacagcatcctacgtggtgttgatagggaaccagtaacctctctgtgtgttcctctatagccctggtgcagacagcatcctacgtggtgttgatagggaccagtaacctctctgtgtgtacctctatagccctggtgcagacagcatcctacgtggagttgatagggaaccagtaacctctctgtgtgtacctctatagccctggtgcagacagcatcctacgtggagttgatagggaaccagtaacctctctgtgtgttcctctatagccctggtgcagacagcatcctacgtggtgttgatagggaaccagtaacctctctgtgtgttcctctatagccctggtgcagacagcatcctatgtggtgttgatagggaatcagtaacctctctgtgtgttcctctatagccctggtgcagacagcatcctacgtggtgttgatagggaaccagtaacctctctgtgtgttcctctatagccctggtgcagacagcatcctacgtggtgttgatagggaaccagtaacctctctgtgtgttcctctatagccctggtgcagacagcatcctacgtggtgttgatagggaaccagtaacctctctgtgtgttcctctatagccctggtgcagacagcatcctacgtggtgttgatagggaaccagtaacctctctgtgtgttcctctatagccctggtgcagacagcatcctacgtggtgttgatagggaacag

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