2024-05-19 11:22:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_037999020 1122 bp mRNA linear PRI 01-DEC-2020 DEFINITION PREDICTED: Chlorocebus sabaeus copper chaperone for superoxide dismutase (CCS), transcript variant X2, mRNA. ACCESSION XM_037999020 VERSION XM_037999020.1 DBLINK BioProject: PRJNA680339 KEYWORDS RefSeq. SOURCE Chlorocebus sabaeus (Cercopithecus sabaeus) ORGANISM Chlorocebus sabaeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023666038.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Chlorocebus sabaeus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1122 /organism="Chlorocebus sabaeus" /mol_type="mRNA" /strain="WHO RCB 10-87" /db_xref="taxon:60711" /chromosome="Unknown" /sex="female" /tissue_type="kidney epithelium" gene 1..1122 /gene="CCS" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 126 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns" /db_xref="GeneID:103221941" CDS 193..960 /gene="CCS" /codon_start=1 /product="copper chaperone for superoxide dismutase isoform X2" /protein_id="XP_037854948.1" /db_xref="GeneID:103221941" /translation="
MTCQSCVDAVRKSLQGVAGVQDVEVHLENQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSDQLQNLGAAVAILGGPGTVQGVVRFLQLSPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGDHFNPDGASHGGPQDSDRHRGDLGNVHADADGCAIFRMEDEKLKVWDVIGRSLVIDEGEDDLGRGGHPLSKITGNSGQRLACGIIARSAGLFQNPKQICSCDGLTIWEERGRPIAGKGRKESVQPPAHL"
misc_feature 193..894 /gene="CCS" /note="copper, zinc superoxide dismutase; Region: PLN02957" /db_xref="CDD:215516" ORIGIN
cggagttaagggtgtctttcgaggctcagtccccgcgacgccggctggttggtgctcctgcgcctgaagagttctgcgtttcgggctggtgactgggtccagaatggcttcggactcggggaaccaggggaccctctgcacgcgatcatcggtcggtccctgccgcccttgcagttggagttcgcggtgcagatgacctgtcagagctgtgtggacgcggtgcgcaagtccctgcaaggggtggcaggtgtccaggatgtggaggtgcacttggagaatcagatggtcttggtacacaccactctgcctagccaggaggtgcaggctctcctggaaggcacggggcggcaggcagtactcaagggcatgggcagcgaccagttgcagaatctgggggcagcagtggccatcctgggagggcctggcaccgtgcagggggtggtgcgcttcttacagctgagccctgagcgctgcctcatcgaaggaactattgacggcctggagcctgggctgcatggactccatgtccatcagtatggggacctcacaaacaactgcaacagctgtggggaccactttaaccctgatggagcatctcatgggggcccccaggactctgaccggcaccgcggagacctgggcaatgtccatgctgatgctgacggctgcgccatcttcagaatggaggatgagaagctgaaggtgtgggatgtgattggccgcagcctggttattgatgagggagaagatgacctaggccggggaggccatcccttatccaagatcacagggaactctgggcagaggttggcctgcggcatcatcgcacgctctgctggcctcttccagaaccccaagcagatctgctcttgcgatggcctcaccatctgggaggagcgaggccggcccatcgctggcaagggccgaaaggagtcagtccagccccctgcccacctttgagcaggacctcaccttggctctgttgctgtcctccagggcgagcactttcctcttccagagggggccagagggaccttgcctgcccagtctttggagagctcagtacagggcaggagctgctgcggtgttcccttggcaaatgagttttattttcatttggga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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