LOCUS       XM_036590544            1517 bp    mRNA    linear   VRT 13-OCT-2020
DEFINITION  PREDICTED: Colossoma macropomum homeobox B8a (hoxb8a), transcript
            variant X2, mRNA.
ACCESSION   XM_036590544
VERSION     XM_036590544.1
DBLINK      BioProject: PRJNA667941
KEYWORDS    RefSeq.
SOURCE      Colossoma macropomum (tambaqui)
  ORGANISM  Colossoma macropomum
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Characiformes; Characoidei; Colossoma.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_023494801.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Colossoma macropomum Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Colossoma macropomum"
                     /mol_type="mRNA"
                     /db_xref="taxon:42526"
                     /chromosome="Unknown"
     gene            1..1517
                     /gene="hoxb8a"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 39 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:118821812"
     CDS             8..745
                     /gene="hoxb8a"
                     /codon_start=1
                     /product="homeobox protein Hox-B8a isoform X2"
                     /protein_id="XP_036446437.1"
                     /db_xref="GeneID:118821812"
                     /translation="

MSSYFVNSLFSKYKSGESLRPNYYECGFAQDLGTRPTVVYGPGTGATFQHAPQIQEFYHHGASTLSAAPYQQSPCAVTCHGEPGNFYGYDALQRQTLFGAQDADLVQYSDCKLAAGGIGDETDNTEQSPSPTQLFPWMRPQAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKSEQEAIEKEKREKEQAAGAQSASEDCEKAKQI"

     misc_feature    order(443..457,461..463,512..514,530..532,569..571,
                     575..580,587..592,596..604,608..613)
                     /gene="hoxb8a"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(449..451,458..460,578..580,587..592,599..601)
                     /gene="hoxb8a"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    452..610
                     /gene="hoxb8a"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

aaaaaagatgagctcctattttgtcaactcactcttctccaaatacaaaagtggagagtcgttacgtcccaattattacgagtgtgggtttgcgcaggacctggggactagacccaccgtcgtgtacggtccaggcaccggggcaactttccagcatgcgccacagatccaggagttttaccaccacggcgcgtccacgctctccgctgctccttaccagcaaagtccgtgcgctgtgacttgtcacggcgagccgggaaacttctacggctacgatgctctgcaaaggcaaactctcttcggcgctcaggacgccgacttggtccagtacagcgactgtaaattagccgcgggaggcatcggcgacgaaacggacaacacggagcagagtccgtcccccacacagctgttcccctggatgcgaccgcaagctgccggacgcaggcgaggccgccagacctacagccgctaccagacacttgagctggagaaggagttcctcttcaacccctacctgactcgcaagcggcgcatcgaggtgtcgcacgccttaggactgaccgagcggcaggtcaaaatctggttccaaaaccgccgcatgaaatggaaaaaggagaacaacaaggacaagttccccagcagtaagtcagaacaggaggcgattgagaaggagaagcgggagaaggagcaggcggctggagcccagtcggcaagtgaagactgcgagaaggctaaacaaatatagagtggacgtgaagggagggcagacagcaatcaggagcgcgaaattaaaaaaaagtatatttaaaaaagagagacgttgaaaaggcggagagtggttttgtcgaatagacacttcagtctacgacgggtcattacatgtttcaatcgatggagggaaagatggtggcggaaaaggaccctaaatctaatgtgtgaccaccgaactttatgatgacgaacgacatgaagcatttctacgttttgtttttgtttttctctaatgttcagagagtaggcctattgtaaactagcctcctttcttcgtggaataattattgtgaaaactcagtttctattgttaggattttgacattaacaattaccttggcagctgtatagttcttaagttaaatggtgcacttttaactgttctcacttatatgttatgatgatgacgtagcgattaatgacttccaacaacatgaaactgcctatttatgccgtagaatatctttttacacccctttagttttctctcagattgatggtattttgttgtcttcctttcttgggttaagcatgcgcacagtggataaaaataaataaaaaaggaaataaaaaaagatgtcatgtgacccattgtttactgtgaaacagattttttgtactgtactcgtgaattggttcttgggaacttgacgatatgctttcattgttcttcatcactttgttctcttgtctaaacctggaagaagacgaaaaaaagtgggcacaataaagtttacaagcgagaa

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