2024-04-29 10:06:48, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_036590543 1520 bp mRNA linear VRT 13-OCT-2020 DEFINITION PREDICTED: Colossoma macropomum homeobox B8a (hoxb8a), transcript variant X1, mRNA. ACCESSION XM_036590543 VERSION XM_036590543.1 DBLINK BioProject: PRJNA667941 KEYWORDS RefSeq. SOURCE Colossoma macropomum (tambaqui) ORGANISM Colossoma macropomum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Colossoma. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023494801.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Colossoma macropomum Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1520 /organism="Colossoma macropomum" /mol_type="mRNA" /db_xref="taxon:42526" /chromosome="Unknown" gene 1..1520 /gene="hoxb8a" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:118821812" CDS 8..748 /gene="hoxb8a" /codon_start=1 /product="homeobox protein Hox-B8a isoform X1" /protein_id="XP_036446436.1" /db_xref="GeneID:118821812" /translation="
MSSYFVNSLFSKYKSGESLRPNYYECGFAQDLGTRPTVVYGPGTGATFQHAPQIQEFYHHGASTLSAAPYQQSPCAVTCHGEPGNFYGYDALQRQTLFGAQDADLVQYSDCKLAAGGIGDETDNTEQSPSPTQLFPWMRPQVAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKSEQEAIEKEKREKEQAAGAQSASEDCEKAKQI"
misc_feature order(446..460,464..466,515..517,533..535,572..574, 578..583,590..595,599..607,611..616) /gene="hoxb8a" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(452..454,461..463,581..583,590..595,602..604) /gene="hoxb8a" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 455..613 /gene="hoxb8a" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
aaaaaagatgagctcctattttgtcaactcactcttctccaaatacaaaagtggagagtcgttacgtcccaattattacgagtgtgggtttgcgcaggacctggggactagacccaccgtcgtgtacggtccaggcaccggggcaactttccagcatgcgccacagatccaggagttttaccaccacggcgcgtccacgctctccgctgctccttaccagcaaagtccgtgcgctgtgacttgtcacggcgagccgggaaacttctacggctacgatgctctgcaaaggcaaactctcttcggcgctcaggacgccgacttggtccagtacagcgactgtaaattagccgcgggaggcatcggcgacgaaacggacaacacggagcagagtccgtcccccacacagctgttcccctggatgcgaccgcaagtagctgccggacgcaggcgaggccgccagacctacagccgctaccagacacttgagctggagaaggagttcctcttcaacccctacctgactcgcaagcggcgcatcgaggtgtcgcacgccttaggactgaccgagcggcaggtcaaaatctggttccaaaaccgccgcatgaaatggaaaaaggagaacaacaaggacaagttccccagcagtaagtcagaacaggaggcgattgagaaggagaagcgggagaaggagcaggcggctggagcccagtcggcaagtgaagactgcgagaaggctaaacaaatatagagtggacgtgaagggagggcagacagcaatcaggagcgcgaaattaaaaaaaagtatatttaaaaaagagagacgttgaaaaggcggagagtggttttgtcgaatagacacttcagtctacgacgggtcattacatgtttcaatcgatggagggaaagatggtggcggaaaaggaccctaaatctaatgtgtgaccaccgaactttatgatgacgaacgacatgaagcatttctacgttttgtttttgtttttctctaatgttcagagagtaggcctattgtaaactagcctcctttcttcgtggaataattattgtgaaaactcagtttctattgttaggattttgacattaacaattaccttggcagctgtatagttcttaagttaaatggtgcacttttaactgttctcacttatatgttatgatgatgacgtagcgattaatgacttccaacaacatgaaactgcctatttatgccgtagaatatctttttacacccctttagttttctctcagattgatggtattttgttgtcttcctttcttgggttaagcatgcgcacagtggataaaaataaataaaaaaggaaataaaaaaagatgtcatgtgacccattgtttactgtgaaacagattttttgtactgtactcgtgaattggttcttgggaacttgacgatatgctttcattgttcttcatcactttgttctcttgtctaaacctggaagaagacgaaaaaaagtgggcacaataaagtttacaagcgagaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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