2024-04-29 14:10:49, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_034640667 1228 bp mRNA linear MAM 26-MAY-2020 DEFINITION PREDICTED: Ailuropoda melanoleuca homeobox B8 (HOXB8), mRNA. ACCESSION XM_034640667 VERSION XM_034640667.1 DBLINK BioProject: PRJNA633539 KEYWORDS RefSeq; includes ab initio. SOURCE Ailuropoda melanoleuca (giant panda) ORGANISM Ailuropoda melanoleuca Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048230.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ailuropoda melanoleuca Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 22% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1228 /organism="Ailuropoda melanoleuca" /mol_type="mRNA" /isolate="Jingjing" /db_xref="taxon:9646" /chromosome="13" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..1228 /gene="HOXB8" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:117795576" CDS 1..393 /gene="HOXB8" /codon_start=1 /product="homeobox protein Hox-B8" /protein_id="XP_034496558.1" /db_xref="GeneID:117795576" /translation="
MEWIPGFGGDSEVPTAGEAGQRRQRLQSLSAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKGDKK"
misc_feature order(100..114,118..120,169..171,187..189,226..228, 232..237,244..249,253..261,265..270) /gene="HOXB8" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(106..108,115..117,235..237,244..249,256..258) /gene="HOXB8" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 109..267 /gene="HOXB8" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
atggaatggatccccggcttcggtggggattcggaggtgcccacggccggcgaggcgggtcagcggcgacagaggctgcagagcctttccgccggacgcaggcgaggccgacagacctacagccgctaccagaccctggagctggagaaggagttcctatttaatccctatctgactcgcaagcggcggatcgaggtatcgcatgcgctgggactgacagagagacaggtcaaaatctggttccagaaccggaggatgaagtggaaaaaagagaacaacaaagacaagttccccagcagcaaatgcgagcaggaggagctggagaaacagaagctggagagggccccggaggcggcggacgagggcgacgcgcagaagggcgacaagaagtaggctccagctgggactgtcagggccgcggtcgccctccgtccgtgggtcccccgactacgccaccgccgtcgcccgcccccgcccgagagagctctggccccgcgagcggggcccggagcccggcctcccgctgcagcgtcccccgccgcgccagtccccgctagtggtagtatctcgtaatagcttctgtgtgtgagctaccgtggatctccttcccttctcttgggggccgggggggaaagaaaaggattttaagcaaggactccctcgccctgcgagggtgagcggctgcggcctggctgagccccccccgcccccgccccgtgtaaaaagcctccttgtgcaatggtcttttttcctttgaacgtgcttctttgtaatgaccgaggtaccgatttctgctaagttctcccaacaacatgaaactgcctattcacgccgtaattctttctgtctccctctccttctctctctctctcttctctctctctctctccccccgtcctcattcccccctcccaacccctctctccccgctgccctccctagctcgctggctttctctcttgcttctctcttttcctcccaaccccccccccctttggtttggcaatttcgtcttaagtgtttctcaaaagaggttactttagttagcatgcgcgctgtgggcaattgttaaaagtgttcttaggtttactgtgaagagaatgtatcctgtatccgtgaattgctttattggggggtgggagggctaattatatattttgttgttcctctatactttgttctgttgtctgcctctgaaaagggcggaagagttacaataaagtttaca
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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