2024-05-19 10:32:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033877694 1776 bp mRNA linear INV 28-APR-2020 DEFINITION PREDICTED: Pecten maximus spore wall protein 2-like (LOC117322756), mRNA. ACCESSION XM_033877694 VERSION XM_033877694.1 DBLINK BioProject: PRJNA625562 KEYWORDS RefSeq; includes ab initio. SOURCE Pecten maximus ORGANISM Pecten maximus Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Pecten. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_047017.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pecten maximus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1776 /organism="Pecten maximus" /mol_type="mRNA" /db_xref="taxon:6579" /chromosome="3" gene 1..1776 /gene="LOC117322756" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:117322756" CDS 1..1776 /gene="LOC117322756" /codon_start=1 /product="spore wall protein 2-like" /protein_id="XP_033733585.1" /db_xref="GeneID:117322756" /translation="
MHNDEFTFKATTCRANKDKTGPKIDKTGTKIDETAPKIDKTGPKIDKTGTNNGITGANKDKTGTKIDKTGTKIDKTGTKIDKTGAKKDKTGPKIDKTETKIDKTGPKIDKTGPKIDKTGPKIDKTGTHNVITGANKDKTGTNNGANKDKTGANKDKTGTNNGITEESKDKTGANKDKTGANKVITGANKGITGANKDKTGANNGITGANKDKTGTNNGITGANKDKTGPKIDKTETKIDKTRPKIDKTGPKIDKTGPKIDKTGTHNVITGANKDKTGTNNGITGANKDKTGTKIDKTGTKIDKTGTHNVITGANKDKTGTNKDKTGANNGITGANKDKTGTNNGITGANKDKTGANKGITEESKDKTGANNGITGANKDKTGANKVITGANKGITGANKDKTGANKDKTGTNKDKTGTNNGITGANKDKTGTNKDKTGTNNVITGANKDKTGTNKDKTGTNNVITGTNKDKTGANNGITGANKDKTGANNGITGANKDKTGTNNVITGANKDKTGANNGITEESKDKTGANKDKTGTNNGITGANKDKTGANKDSTGANKDNNRAPEEHPDITVARGELLVSDNWRITIQQ"
misc_feature 1276..1563 /gene="LOC117322756" /note="Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507" /db_xref="CDD:248061" misc_feature order(1294..1296,1300..1302,1306..1314,1339..1341, 1345..1347,1351..1356,1381..1383,1387..1389,1393..1395, 1399..1401,1423..1425,1429..1431,1435..1437,1441..1443, 1465..1467,1471..1473,1477..1485,1507..1509,1513..1515) /gene="LOC117322756" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:240610" ORIGIN
atgcacaacgacgagttcacattcaaggccacaacttgccgagcaaacaaagacaaaacaggaccaaagatagacaaaacaggaacaaagatagacgaaacagcaccaaagatagacaaaacaggaccaaagatagataaaacaggaacaaacaatggtattacaggagcaaacaaagacaaaacaggaacaaagatagacaaaacaggaacaaagatagacaaaacaggaacaaagatagacaaaacaggagcaaagaaagacaaaacaggaccaaagatagacaaaacagaaacaaagatagacaaaacaggaccaaagatagataaaacaggaccaaagatagacaaaacaggaccaaagatagacaaaacaggaacacacaatgttattacaggagcaaacaaagataaaacaggaacaaacaatggagcaaacaaagacaaaacaggagcaaacaaagataaaacaggaacaaacaatggtattacagaagaaagcaaagacaaaacaggagcaaacaaagacaaaacaggagcaaacaaagttattacaggagcaaacaaaggtattacaggagcaaacaaagacaaaacaggagcaaacaatggtattacaggagcaaacaaagacaaaacaggaacaaacaatggtataacaggagcaaacaaagacaaaacaggaccaaagatagacaaaacagaaacaaagatagacaaaacaagaccaaagatagataaaacaggaccaaagatagacaaaacaggaccaaagatagacaaaacaggaacacacaatgttattacaggagcaaacaaagataaaacaggaacgaacaatggtattacaggagcaaacaaagacaaaacaggaacaaagatagacaaaacaggaacaaagatagacaaaacaggaacacacaatgttattacaggagcaaacaaagataaaacaggaacgaacaaagacaaaacaggagcaaacaatggtattacaggagcaaacaaagacaaaacaggaacaaacaatggtataacaggagcaaacaaagacaaaacaggagcaaacaaaggtattacagaagaaagcaaagacaaaacaggagcaaacaatggtattacaggagcaaacaaagacaaaacaggagcaaacaaagttattacaggagcaaacaaaggtattacaggagcaaacaaagacaaaacaggagcaaacaaagacaaaacaggaacaaacaaagacaaaacaggaacaaacaatggtattacaggagcaaacaaagacaaaacaggaacaaacaaagacaaaacaggaacaaacaatgttattacaggagcaaacaaagacaaaacaggaacaaacaaagacaaaacaggaacaaacaatgttattacaggaacaaacaaagacaaaacaggagcaaacaatggtattacaggagcaaataaagacaaaacaggagcaaacaatggtattacaggagcaaacaaagacaaaacaggaacaaacaatgttattacaggagcaaacaaagacaaaacaggagcaaacaatggtattacagaagaaagcaaagacaaaacaggagcaaacaaagacaaaacaggaacaaacaatggtattacaggagcaaacaaagacaaaacaggagcaaacaaagacagtacaggagcaaacaaagacaacaaccgtgctccagaagagcatcctgatataactgtagcacgaggagagttgttggtgtcagataattggcggataacgattcagcaatag
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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