2024-04-29 10:44:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033847211 1210 bp mRNA linear MAM 27-APR-2020 DEFINITION PREDICTED: Tursiops truncatus homeobox B8 (HOXB8), transcript variant X2, mRNA. ACCESSION XM_033847211 VERSION XM_033847211.1 DBLINK BioProject: PRJNA625792 KEYWORDS RefSeq. SOURCE Tursiops truncatus (common bottlenose dolphin) ORGANISM Tursiops truncatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Tursiops. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_047053.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Tursiops truncatus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1210 /organism="Tursiops truncatus" /mol_type="mRNA" /isolate="mTurTru1" /db_xref="taxon:9739" /chromosome="20" /sex="male" /tissue_type="spleen" /country="USA: Baltimore, Maryland" /lat_lon="39.2851 N 76.6083 W" /collection_date="11-Nov-2018" /collected_by="Leigh Clayton, Jill Arnold, Winston Timp, Norah Hilger" gene 1..1210 /gene="HOXB8" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 85% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:117309455" CDS 13..741 /gene="HOXB8" /codon_start=1 /product="homeobox protein Hox-B8 isoform X2" /protein_id="XP_033703102.1" /db_xref="GeneID:117309455" /translation="
MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAKDEGDAQKGDKK"
misc_feature order(448..462,466..468,517..519,535..537,574..576, 580..585,592..597,601..609,613..618) /gene="HOXB8" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(454..456,463..465,583..585,592..597,604..606) /gene="HOXB8" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 457..615 /gene="HOXB8" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
aaattcaataaaatgagctcttatttcgtcaactcactgttctccaaatacaaaaccggggagtccctgcgccccaattattatgactgcggcttcgcccaggacctgggcggccgacccaccgtggtgtacggtcccagcagcggcggcagcttccagcacccgtcgcaaatccaggagttctaccacgggccgtcgtcgctgtccacggctccctatcagcagaacccgtgcgccgtggcgtgccacggggacccgggcaacttctacggctacgacccgctgcagcggcagagcctgttcggtgcgcaggatccagacctggtgcagtacgcagactgcaagctcgccgccgccagcggcctgggggaggaggccgaggggtctgagcagagcccgtcgcccacacagctcttcccctggatgcgcccgcaagccgccggacgcaggcgaggccgacagacctacagccgctaccagaccctggagctggagaaggagttcctatttaatccctatctgactcgcaagcggagaatcgaggtatcgcatgcgctgggactgacagagagacaggtcaaaatctggttccagaaccggaggatgaagtggaaaaaagagaacaacaaagacaagttccctagcagcaaatgcgagcaggaggagctggagaaacagaagctggagcgggccccggaggcgaaggacgagggcgacgcgcagaagggcgacaagaagtaggctccagctgggactgccagggccgcggccgccctgcctccgcgggtcacccgaccgcgctgccgtcgcccgcccccgcccgagacagctctagccccgtgagcggggcccggagcctggcctcccaccgcagcttcctcgccgcgccagtccccgctagtggtagtttctcgtaatagcttctgtgtgtgagctaccgtggatctccttcccatctcttgggggccggaggggtgggaaagaaaaggattttaagcaaggactccctctccctgctagggtgagcggctgcggcctggctgagccccacccccacgcccctgccccgtgtaaaaagcctccttgtgcaatggtcttttttcctttgaacgtgcttctttgtaatgaccgaggtaccgatttctgctaagttctcccaacaacatgaaactgcctattcacgccgtaattctttctgtctccctccctc
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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