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2024-04-30 23:55:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_030247911            6822 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus glia maturation factor, beta (Gmfb),
            transcript variant X3, mRNA.
ACCESSION   XM_030247911
VERSION     XM_030247911.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000080.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6822
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="14"
     gene            1..6822
                     /gene="Gmfb"
                     /gene_synonym="3110001H22Rik; 3110001O16Rik; D14Ertd630e"
                     /note="glia maturation factor, beta; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 10 ESTs, 2692 long SRA reads, 3 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:63985"
                     /db_xref="MGI:MGI:1927133"
     CDS             2890..3219
                     /gene="Gmfb"
                     /gene_synonym="3110001H22Rik; 3110001O16Rik; D14Ertd630e"
                     /codon_start=1
                     /product="glia maturation factor beta isoform X3"
                     /protein_id="XP_030103771.1"
                     /db_xref="GeneID:63985"
                     /db_xref="MGI:MGI:1927133"
                     /translation="
MKIDKDERLVVLDEELEGVSPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH"
     misc_feature    <2890..3180
                     /gene="Gmfb"
                     /gene_synonym="3110001H22Rik; 3110001O16Rik; D14Ertd630e"
                     /note="ADF-homology domain of glia maturation factor beta
                     and related proteins; Region: ADF_GMF-beta_like; cd11283"
                     /db_xref="CDD:200439"
ORIGIN      
ggcggcgaagggaggcaccgcggggttggacggactcgcagtccgttcccgacttccagcggcagcgcggaagacccccgcgctgcgggcggacggttggaacgtggcctccgcgtggacccttgtggtccccgcggcggaaacgggctgggcctgagggccggcgttgtaggcgagtgtcagggttctggttgcattccggcttcgcccaggcttctttctacctgcacccccttgtttctggctgaatagctcccgatacccacattcttccagtccaggccgttggaacccatgtgacccagggctctgattttgcctttaagcaactgtcagaggtttagttttgctgcgtctggggcagtggtttctgatctccttgacgatggaccccaagcataaagacaaagtggagaattaagtcaggtgctctcaaggaccttctggagccttcccaaagtgttttttaagtacgaccaagtatcatggaaacaacaacaggaagacacttatctataaatcctctcttggggaccacttccgtctagcagatcttaccgcggtcattgaacccagtgaactcgtggcttttcatcgttttgacctttcagctacattccagggtgttgacactggtgtttgaggcatctctttaattttgcctaccccaacccccttggcttttgggattcagaactggctttcctcctatttctgctgatgcatctgttccccttggattcctttctccattccttggactatgcccgtgagtgccctaggctccattccaaggcttcattttctattgtttttctctttgctgaacttctggcttcagtaaccacctacgttgagttgacctgtgagttcctatctctgaccttagctgagatccaaccagcagttacattccactttttggttaatttcatcacacagaagccacagaggctcctcagtttgtccaaaaagaactcatagcttcctccacacatctggtcttcattcagccggaattctgcaacttggctaaaggtgtgtttgtgttccttacacaaagccagaagtctagaagttatctttgtaagtctttatttccttcatattgaatctaacccagttcttatgtagtggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagagcgagcgcgcgagcaagcgctggagttcagcatatctgggttgcttcctgggtccactacctgtatgacttaagactttggagaagatgcttctagcctgtctaaatcttaaatttcctgccatatgtggatggcactggtgtgggtgcgatagtttggagcataaagtgggagtcagctttgtgctgtatacgtggtagctcactgatgttattcacgtcttttatgctgatctttaattcctcggctacttgtcatctctgaaatagtcttgctggtaactagggctgttgtgctcttcctggctctctgcctgcttactgcatatcacaacaaatatgatcttatcaaaattcaaatatggccatgtttgccttccctacaatacttaaagcgtgttgatagcttatatttgctcatgggacagaaatctgagtacctacaatgcccttccctactctttttttttttttttttaaagatttatttatttattatatgtaagtacactgtagctgtcttcagacactccagaagagggagtcagatcttgttacggatggttgtgagccaccatgtggttgctgggatttgaactctggaccttcggaagagcagtcgggtgctctaacccactgagccatctcaccagcccccttccctactcttggtccttgctcctgttgtgggcatctgagtcgcaccgtggtttcatgactttgactgccttgttcactctaatcactttagatagcttttgctgtcaccgtgtttttcacttttaagtcttcaaagcatcttggctctcctgtttagcctttttcacaggtatcaactaagaggtttttttggtctggtcttttatgtaggtcccttctgtattagattatagtgtaagctagcacttagcatagtggtggtgctcataaactgttcatctattgactacaccaataaatgaaggtttaaactcaactatctttaacatttgccacctagaattgtttttatagctttgtactcattcctatatgctttcaaatgtaaatgaatgtgaattgtccaagcctgagtccatttccttctccccccaccctctggtcctgcatttttagaagagacaattgatccttctgcctcagcgtctaaatgctggaattacagacgtgccaccactcctggtttctgagtccttgtaggaaggtgtttttgcccatgttgtagcattgggaaggaagaagacacaaactgaattacacaagtgaatcagagcatgttttcatcttttccaccatgctaggggtcacttgagtgccgtccaaacagagcaccacactgagcctagggcctagggtttctggccctagggtgtcaaacttacagttgtggctctgattataagagctgaaagctttaccttctaaaactatcatagcatagcatggtggcacacacgtgtaagccaagctactgggctactgggctactggggaggctaaagtaaagaagatcacaagtttgagccagcttgggtaacaacaaccaccctctgtcaagggctggggcgatggagtgagtctttggtggtttgtgatgttgctgaagatttagtggaaaagctgagaaagtttcgttttcgaaaagaaacccacaatgctgctattataatgaagattgacaaggatgaacgcctggtggtgctggatgaggagctcgagggtgtctctccagatgaacttaaagacgaactacccgagcggcagcctcgcttcattgtgtatagttataaataccaacatgatgatggcagagtctcgtacccgctctgctttattttctccagtcctgtcgggtgtaagcctgagcagcagatgatgtacgctgggagtaagaacaagctagtccagactgccgagctaaccaaggtatttgaaataagaaacactgaagatctaactgaagaatggttacgtgagaaacttggatttttccactaatgtgaacttctgtgtttctaaagtatttatgtattaacctgaccatactggaaccagacataaatagttatttatgcctaaaaatgcactgttacttacagtttgtttcctgcagtaaagaaaaattcttcatttgtgcagtttgaacaaaggggaaatcatcttcatagtaatgagacgttgtgaagtgttcctgcatctgtcattgttagggggactacttttctccagggatgctttgcacccttttgactaatttctataatttatgattcagaatttgtaactgtttgcagacactataggaaggtgggtattagactgtgatagacaacagttcctcctctgaccactcctgggtactggcagtttataagtgcaagtagcattttatcacctgtcacatcattgcggttcatttgggactgaagcgtaagtgaccgattctgagccttgagtagagatgtagtgggacctctgttgaactctccgccagttttcctcctctcttgggttcctgtatctttgcaatcaagtgtagaatcttcatcaatcactcctccttaaggtccggaagttgatttttatggtagagttaggattgttaggttttcttcttatggagaatagcatctgaatcttagaaactgggagctctataatcaagggcttcgttcttggttatgtcactggcagggagcttagactgtagcttggtaacactgcaaagcacctcctaatatgttaatactgtgcctttgattggtcagctttaccattagcttaagactgctacactgccagtgttctagatttggtgaaattaatacttttttaaagggttcaaataaaacaattttctaatatatataattaaaatttgtaataaaccaacttgttacttttaaaattccaactatctgcccaaagttatgatagtaggtgagagttataatttggggtatatttgctattagttttgtgccatatgtaagcattatttaaacattggccacaattaataacaacacatcaatagatgtcataccttttatcctaaatgtcagaagaaattctaatatgaactaagccagtcacagtttgatgacaccatcatcaggaagcaagatttctaatctacttggaattcttaagtttcacttaagaaaacaatgtaagaaatgctgaatagtaatttgacttaaagagacaagttaagagactgtagagacgaccaaattcttatattaagaaggtagtgattttgattgggcattggtggcacataacatttaatcctggcatttgggaggcagagacaggcagatctctgagttcaagaccagcctggtctgcagaagcaagttccagggtaaccaaggctaaacagatgaacaccctgctcccctaaaaagaaaaaaatagcaaaacatctttatgttggcatgtgttcattgcatagtatttgtctcatttagggctttgtgccggttttactggagggaagatagctggaactgtcacagtagagtggagtgtgttgtattcccaactgtgtgctcactagcctgtatgtcaggaagcaattgcaagtgctagaggaggtgatcatattggttcatgaatggaaaagtccctttatttcagtgtccagagagcaagaaaacttcatctaagaagtttaggacttcattatacaggtattttggtatgagctagagaataacttgcttataatcccacaggaatgcagatgagacccaagtaaagggggactttgatgtctctgactgatgcacataagggttcgtttcacctggttatagaagcacgctttcagaagcagtgctacaagtctacgttttaaattcagttctttattttggcttgcatatttaaatcagtttttgaaatttccaagtctttcatagagtgaatggccctgacctgccacacacaggactcttagtctctagttcaagcagcaacaccagtggtgagcagctttccttttcaagcttgtctgactcttacctgtagatgggtcgtttgtaaggtagcacactgagttggggcattaatagaacatggttattctgtctgtccttagacaagtttgtaagtcctgtgccctgcagtgttcatgaaatatttatgtaagtttccctttagctaaaatttacagtatttttcttattctttttctgctgttccgtaaagagtatgtccagatttcataattccaggttttttacactccatgtctttcagcaacaaccattcccactcagccttaatcttaatctttcctttttggaagccactcttcccgggaaccttttaagcaagcattgctttggaaatttctgatcttactaagttgtgcatagcatctaatgtcagaaccgactaggaatcacaatgtatatgtcatgtggttttggtgacaacatgagtgacacatgaagaggggtattctcaggttaccgtgctgcaattccaaaaggtctgagttttaaacagtgatttgttctggtattgacacaattatgttaggaaaaaagctggttgactgttttgtttaattgacttctaaactatgtttgaattgtctgaggagtttactggatgcttagcgcagttaaacattctcgtcctgtgagagaaacattctcttgtaggagaggtgttgcagattgtgattataaaataatttgtagcaaaaatatgtgttagcattttccctccctttttgtctcctattttcaggagacaaacttagccataaactgaatcctggtctgacacttccacaaatggtttccagttagaggagtttattgccaaattaaacttggctcttttcccacttagatagaaactaagaaagctgcacataagaaatgtttggacacttgtaaaactcaagtgactacattaatctgtatgtaaactagtgagcagacacatccataagaattgaaatgccaatatttgggaagtagagagtaacttatatcctatcagatctattgagtgttaatatggtagcactctgtatttgttctgtagactgataatactggaatccataaagtttgagcctttacaacttatgtaaagaaatgttgcaaacatttctggatgagtcttactttgtatctccagaagaatgtagatgtctcctaggcctcctcgtgctgatggttctgagctgaatatttcttggtaggccatgtgacacttcagatcagtgatcctactcctgtaatgttaggacaattatattacgcttatgatagaaacagtttcttgcttttcggaatattattacttgaataccacttgagatcattagcatgccaggaaaagtccattgattttgatggtccaatgtaatctcattcaggaggcttgaaacattggtggtttagtcttgtgaattttaacagttctctgtcattgtttaagaaaaccaacaactggcactacttcttaagctgtggtttcagtctctgctagttcataccgcatgtttattttggagtcttttggtaagcatggtgcttgtactggtttaaataaaatgctaacatgaaagaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]