2024-05-19 05:47:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_029931343 301 bp mRNA linear MAM 14-JUL-2019 DEFINITION PREDICTED: Suricata suricatta sodium/potassium-transporting ATPase subunit alpha-2-like (LOC115284886), partial mRNA. ACCESSION XM_029931343 VERSION XM_029931343.1 DBLINK BioProject: PRJNA553468 KEYWORDS RefSeq. SOURCE Suricata suricatta (meerkat) ORGANISM Suricata suricatta Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Herpestidae; Suricata. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_021870295.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Suricata suricatta Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..301 /organism="Suricata suricatta" /mol_type="mRNA" /isolate="VVHF042" /db_xref="taxon:37032" /chromosome="Unknown" /country="South Africa: Kalahari Meerkat Project" /lat_lon="26.98 S 21.83 E" /collection_date="02-Feb-2016" gene <1..>301 /gene="LOC115284886" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns" /db_xref="GeneID:115284886" CDS <1..>301 /gene="LOC115284886" /codon_start=1 /product="sodium/potassium-transporting ATPase subunit alpha-2-like" /protein_id="XP_029787203.1" /db_xref="GeneID:115284886" /translation="
DLKDMTSEQLDEILRNHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQAADMILLDDNFASIVTGVEEGEGP"
misc_feature <1..>291 /gene="LOC115284886" /note="sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit; Region: ATPase-IIC_X-K; TIGR01106" /db_xref="CDD:273445" ORIGIN
gacctgaaggacatgacgtcggagcagctggacgagatcctccggaaccacacggagatcgtgttcgcgcggacgtccccgcagcagaaactcatcatcgtggagggctgtcagcggcagggggccatcgtggcggtgaccggggacggcgtgaacgactcccccgcgctgaagaaggccgacatcggcatcgccatgggcatcacgggctccgacgtgtcgaagcaggccgctgacatgatcctgctggatgacaacttcgcgtccatcgtcacgggcgtggaggagggtgaggggccgg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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