2024-05-19 10:04:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_029110494 570 bp mRNA linear INV 07-MAY-2019 DEFINITION PREDICTED: Metaseiulus occidentalis copper-transporting ATPase 2-like (LOC114827997), mRNA. ACCESSION XM_029110494 VERSION XM_029110494.1 DBLINK BioProject: PRJNA166945 KEYWORDS RefSeq; includes ab initio. SOURCE Galendromus occidentalis (western predatory mite) ORGANISM Galendromus occidentalis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Mesostigmata; Gamasina; Phytoseioidea; Phytoseiidae; Typhlodrominae; Galendromus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003804581.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Galendromus occidentalis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..570 /organism="Galendromus occidentalis" /mol_type="mRNA" /db_xref="taxon:34638" /chromosome="Unknown" gene 1..570 /gene="LOC114827997" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 1 Protein" /db_xref="GeneID:114827997" CDS 1..570 /gene="LOC114827997" /codon_start=1 /product="copper-transporting ATPase 2-like" /protein_id="XP_028966327.1" /db_xref="GeneID:114827997" /translation="
MEPTVEHTLSVLGMTCKSCVNSIQLTIGERSDVKSVKVALDEAKAYVSAPASVSPAVLAAAIDDMGFEAAYLHTTTSIRIDGMTCQSCVLNIQNTLTPVEGIIEIEISLEEAKGTFKFDAKSISVQQIVEHIDDMGFIPKWPYEEDVDKDFDQIAKRHASALDEVDAILSGSDPDGWVTNSEDTIRETL"
misc_feature 22..210 /gene="LOC114827997" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(40..48,55..57) /gene="LOC114827997" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 232..411 /gene="LOC114827997" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(247..255,262..264) /gene="LOC114827997" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" ORIGIN
atggaaccgacggtagagcacacgctgtccgtcttgggcatgacctgcaaatcatgcgtcaacagcattcaactcaccatcggagagagatcagatgtcaaaagcgtcaaggtcgccctggatgaggcgaaagcttacgtgtctgctccggcgtcagtgtcccctgcggttctagctgcagcgatagacgacatgggcttcgaagccgcttacctgcacacgacgacaagcatccgaatcgatggtatgacatgccaatcgtgcgtgctaaatatccagaacacgttgacaccggtcgaagggatcatcgaaatcgaaatatccctcgaagaagcgaaaggaaccttcaaattcgatgccaaaagcatatccgtacaacagatcgtcgaacatatcgacgatatgggattcattccgaaatggccgtacgaagaagacgtggacaaggactttgatcagattgccaagcgacacgcttcagctctggatgaggtcgacgcgatcctgagcggctccgacccggacggctgggtcacaaactcagaggataccatcagagaaacactgtga
//
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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