2024-05-19 15:13:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_029084676 1433 bp mRNA linear VRT 02-MAY-2019 DEFINITION PREDICTED: Antrostomus carolinensis ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), mRNA. ACCESSION XM_029084676 VERSION XM_029084676.1 DBLINK BioProject: PRJNA265383 KEYWORDS RefSeq; includes ab initio. SOURCE Antrostomus carolinensis (chuck-will's-widow) ORGANISM Antrostomus carolinensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Caprimulgimorphae; Caprimulgiformes; Caprimulgidae; Antrostomus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_010311361.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Antrostomus carolinensis Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1433 /organism="Antrostomus carolinensis" /mol_type="mRNA" /isolate="BGI_N321" /db_xref="taxon:279965" /chromosome="Unknown" /sex="male" /country="USA" gene 1..1433 /gene="ST6GALNAC5" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 17 Proteins" /db_xref="GeneID:104523968" CDS 1..789 /gene="ST6GALNAC5" /codon_start=1 /product="alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5" /protein_id="XP_028940509.1" /db_xref="GeneID:104523968" /translation="
MFTVNVEVCMSLQPLKMHCKSCALVTSSGHLLGSKQGDRIDETECVIRMNDAPTRGYGKDVGNKTSLRVIAHSSIQRILRNRNELLNMSHGAVFIFWGPSSYMRRDGKGLVYNNLQLMNQILPQLKAYMISRHKMLQFDDLFKRETGKDRKISNTWLSTGWFTMTIALELCDRINVYGMVPPDFCRDPNHLSVPYHYYEPLGPDECTMYISHERGRKGSHHRFITEKRVFENWARTFNIHFFQPDWKPEPLTVNHPEIKPVV"
misc_feature 31..597 /gene="ST6GALNAC5" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:425864" ORIGIN
atgtttacagttaatgttgaagtatgtatgtctttgcagcctttaaaaatgcactgcaagagttgtgcattggtaaccagctctggacaccttctgggaagtaagcaaggtgacagaatcgacgagacagagtgcgtaatacgaatgaatgatgcacctactcgaggttatggaaaagatgttggaaacaaaacgagccttcgagtcattgcacattccagtattcagaggattttgagaaatcgcaatgaactcttaaatatgagccatggtgctgtgtttatcttctggggtcccagcagctacatgaggagggatggcaaaggcttggtgtataataacctgcagctgatgaatcagatactgcctcaattaaaagcatatatgatttctcgccacaagatgcttcaatttgatgacctttttaaacgggaaactgggaaagacaggaagatatccaacacttggcttagcacgggctggttcacaatgactatcgcattagagctctgtgacaggataaatgtttatggcatggtgccaccggatttctgcagggatcctaatcatctttcagtaccttatcattattatgaacctttgggacctgatgaatgcacaatgtacatttcacatgagcggggacgaaagggcagtcatcatcgtttcatcacagagaaacgagtgtttgagaactgggcacggacattcaatattcacttttttcaaccagactggaaaccagaaccactcactgtaaatcaccctgagattaaaccagtggtctgagggatgaatgcataaaactgccatcacagtcacccactgtgtcaagccttcgaggtgttggaccttctgggatcgcaaggcaaccaagaggcaaagggtaacaggatctgcagctgataactgcaacaacagtctggaagttacgatgaaggagcagagtgtatcaagagtactttctgtggaaatgtgtatgaacccagtatatagcctttttggccatctgacttcctgtatgtgtatgtgatttgtgaaaaacaacttatcattaatgggatgggtaattcattatgggtttttaaagtacaatgccactgaattttcatagtgaaaacttacggtatttatttaaaggaggtttttatgcaacctaggccaatatttttctaattcacagttaggtagttgtttatctttcataatctttcaaatccaaaattaatattcctgatgatttgaaaggcctagcattttatttataaaatttgtttgaaaaatatgattctatatagcatgtaattaatatttgatctggaaatgttgcatttcttttaaaaattttgggctctgttccagcctaaagcctttaagagcaagaatggtcccatgtgcagatctagctaacttaacattctgacatttcatgt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]