2024-05-19 07:02:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_028312567 925 bp mRNA linear INV 12-MAR-2019 DEFINITION PREDICTED: Ostrinia furnacalis copper-transporting ATPase 1-like (LOC114358567), partial mRNA. ACCESSION XM_028312567 VERSION XM_028312567.1 DBLINK BioProject: PRJNA525080 KEYWORDS RefSeq; includes ab initio. SOURCE Ostrinia furnacalis (Asian corn borer) ORGANISM Ostrinia furnacalis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Pyraloidea; Crambidae; Pyraustinae; Ostrinia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_021134265.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ostrinia furnacalis Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 15% of CDS bases ##RefSeq-Attributes-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..925 /organism="Ostrinia furnacalis" /mol_type="mRNA" /isolate="ACB-3" /db_xref="taxon:93504" /chromosome="Unknown" /sex="female" /dev_stage="Pupae" /country="China: Beijing" /collection_date="2015-04-09" gene <1..>925 /gene="LOC114358567" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 84% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:114358567" CDS <1..>925 /gene="LOC114358567" /codon_start=2 /product="copper-transporting ATPase 1-like" /protein_id="XP_028168368.1" /db_xref="GeneID:114358567" /translation="
SLLPKPIPTDLLIDMGTSSEESEVVLHVTGMTCQSCVNTIEVVSINETNSQNNSQEGSGDSAKPPTPVKSKTHANGTASPMADRQTEPVELSCCTLEVKGMTCASCVAAIEKSCSKLYGVHSIVIALLAAKAEVKYEPAKISAADVARSVTELGFPAEVRADCDGSGQKEMQVLIKGMTCASCVNKIEKTVLKLPGVVSCAVALTTSKGKIKYMAEQIGPRSICDAINSLGFEASVVGPRDRGTTHYLEHKEEIKRWRTAFLISLLFGGPCMVSMAYFMAHMEHGHIAVLPGLSLENLIMFLLATPVQ"
misc_feature 284..475 /gene="LOC114358567" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(302..310,317..319) /gene="LOC114358567" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 515..>925 /gene="LOC114358567" /note="Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217" /db_xref="CDD:225127" misc_feature 524..712 /gene="LOC114358567" /note="copper chaperone CopZ; Region: chaper_CopZ_Eh; NF033794" /db_xref="CDD:411374" ORIGIN
aagtctcctaccaaagccaatacccaccgatcttctgatagacatggggacgtcaagcgaagagagcgaagtggtgctacacgtcaccggcatgacttgccagtcgtgcgtcaacaccatcgaagtcgtcagcatcaatgaaacaaattctcagaacaactcccaagaaggatctggtgatagtgccaaaccaccaacacctgttaaaagcaaaacacacgcaaacggcacagcgtcgcccatggcagacagacagacagagccagttgaactgtcttgctgtacgctggaagtgaaaggcatgacgtgcgcctcctgcgtcgctgctatagagaagagctgttccaagctgtatggcgtccactcaatagtaatagcccttctagcagctaaagcagaagtcaagtacgagccggcaaagatatcggcggcagacgtggctcggtccgtcaccgaacttggattcccggctgaagtgcgagcggactgcgacggcagcgggcagaaggagatgcaggttctgatcaaaggcatgacgtgcgcgtcgtgtgtcaacaaaatagagaagactgtgctcaaattgcccggcgtggtttcttgtgcagtcgcgctcacaacttccaagggcaaaataaaatacatggcggagcagataggcccccggagtatatgcgacgcaatcaactccctcggcttcgaggcttcggtcgtcgggcctagggataggggcaccacacactacttggagcacaaagaagaaataaaaagatggcggacggcgttcctaatatccctactattcggcgggccctgcatggtgtccatggcttacttcatggcgcacatggagcacgggcacatcgcggtgctgccgggcctcagtctggagaacctcatcatgttcctgctcgccacgcctgtgcag
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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