2024-05-19 16:49:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026853465 2233 bp mRNA linear VRT 24-OCT-2018 DEFINITION PREDICTED: Athene cunicularia ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), transcript variant X2, mRNA. ACCESSION XM_026853465 VERSION XM_026853465.1 DBLINK BioProject: PRJNA497593 KEYWORDS RefSeq. SOURCE Athene cunicularia (burrowing owl) ORGANISM Athene cunicularia Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Strigiformes; Strigidae; Athene. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020799109.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Athene cunicularia Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2233 /organism="Athene cunicularia" /mol_type="mRNA" /isolate="RWA" /db_xref="taxon:194338" /chromosome="8" /map="unlocalized" /sex="male" /tissue_type="blood" /dev_stage="adult" /country="Argentina: rural area near Bahia Blanca" /collection_date="2013" gene 1..2233 /gene="ST6GALNAC5" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:113482636" CDS 780..1472 /gene="ST6GALNAC5" /codon_start=1 /product="alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 isoform X2" /protein_id="XP_026709266.1" /db_xref="GeneID:113482636" /translation="
MNGKMSKANFEVCVSLQPLKMHCKSCALVTSSGHLLGSKQGDRIDETECVIRMNDAPTRGYGKDVGNKTSLRVIAHSSIQRILRNRNELLNMSHGAVFIFWGPSSYMRRDGKGLVYNNLQLMNQILPQLKAYMISRHKMLQFDDLFKRETGKDRDPNHLSVPYHYYEPLGPDECTMYISHERGRKGSHHRFITEKRVFENWARTFNIHFFQPDWKPEPLAVNHPEIKPVV"
misc_feature 822..>1079 /gene="ST6GALNAC5" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:425864" ORIGIN
ctttgcccctttttagttctcatgctgagcagcagatacacttacatactcctcttattgatacctatattggtggcatacttcagtaatatgatttatcattcattttcattttcatgaaagcttgttttactctcctgatttcattaggtcagccactcactgaacaggcacctcctgttccattttactgtgtaacttttaaacatgacctgataagctaggaaaagttcagtgcactaactcactgtcgtgtaaaatacacaaagacattaatgacctgctctgactgttgaaccacaaaggaggtacgagagccctgcagtggttatggcaccaacctggaaatagcatggaaggattggaccaaggtataattctcttcccttagcaaactgtcctgaccccaaggttgaaaagctattcacacctgtgcttatgaggacttacaattgattatttccgggaaaaatgaaaaatactccaattacagctcatttatggtaagtggaagaagtacaatcctgaacagctgggaacagtatagaagctgttgtgattattgtatatgaagcagccatggaaaggaggatttcaacagtggtcttcttaactccacagaggacctttaagggctacaccacattttccccatctacaaaaagtacaggtaatgtgtccccagttatttggtaagcctactgggagagatttatgtaaagtcctctgagatttttgctgtaaaataggccatgcacatgtaatacagttatcatgtaatgaatgggaagatgtctaaagctaattttgaagtatgtgtgtctttgcagcctttaaaaatgcactgcaagagttgtgcgttggtaaccagctctggacaccttctgggaagtaaacaaggtgacagaatcgacgagacagagtgcgtaatacgaatgaatgatgcacctactcgaggttatggaaaagatgttggaaacaaaacgagccttcgagtcattgcacactccagtattcagaggattctgcgaaatcgcaatgaactcttaaatatgagccacggtgctgtgtttatcttctggggtcccagcagctacatgaggagagatggtaaaggcttggtatataataacctgcagctgatgaatcagatactgcctcagttaaaagcatatatgatttctcgccacaagatgcttcaatttgatgacctttttaaacgggaaactgggaaagacagggatcctaatcatctttcagtaccttatcattattatgaacctttgggacctgatgaatgcacaatgtacatttcacacgagcggggacgaaagggcagtcatcatcgtttcatcacagagaaacgagtgtttgagaactgggcacggacattcaatattcactttttccaaccagactggaaaccagaaccactcgctgtaaatcaccccgagattaaaccagtggtctgagggatgagtgcacaaggccacaaccacagccacctactgtgtcagccttgggggtgttggaccttctgggacagcaaggcaacctagaggagaagggtaacaggatttgcagccgataactgcaacagcagtcaggaagttacgagatgaaggagcagagcgtatcaagagtactttctatcgaactgtgtattaatccagtatatagcctcttctggccatctgacttcctgtgtgtgtatgtgatttgtgaaaaaaaaacggagtatcattaacggattgttaattcattatggttttttaaattacaatgccactgaattttcatagtgaaaacttaagtatttatttaatggaggtttttatgaaacctaggccagtatttttctaattcactgttatgtggttgtttatctttcataatctttcaaatccaaaattactattgctgatggtttgaaaggcctagctttttatttataaaatttgttttaaaagtatgattctatatagcatgtaatgaatatttgatctggaaatattgcattccttttaaaaattttgggctctgttccagcctaaagcctttaacagcaagaatggtcccatgtgcagatctagctaactttacattctgacatctcatgttaatatgaaaacggtggtgaaaattctgtttgatattaatgtgcatttgctgctgtgctatcaagctgctggttttttaattaggggtgggaggaaggagggcaaagttaatc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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