GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-19 13:01:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_026853464            2326 bp    mRNA    linear   VRT 24-OCT-2018
DEFINITION  PREDICTED: Athene cunicularia ST6 N-acetylgalactosaminide
            alpha-2,6-sialyltransferase 5 (ST6GALNAC5), transcript variant X1,
            mRNA.
ACCESSION   XM_026853464
VERSION     XM_026853464.1
DBLINK      BioProject: PRJNA497593
KEYWORDS    RefSeq.
SOURCE      Athene cunicularia (burrowing owl)
  ORGANISM  Athene cunicularia
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Strigiformes; Strigidae; Athene.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_020799109.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Athene cunicularia Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2326
                     /organism="Athene cunicularia"
                     /mol_type="mRNA"
                     /isolate="RWA"
                     /db_xref="taxon:194338"
                     /chromosome="8"
                     /map="unlocalized"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /country="Argentina: rural area near Bahia Blanca"
                     /collection_date="2013"
     gene            1..2326
                     /gene="ST6GALNAC5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 2 ESTs, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:113482636"
     CDS             765..1565
                     /gene="ST6GALNAC5"
                     /codon_start=1
                     /product="alpha-N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 5 isoform X1"
                     /protein_id="XP_026709265.1"
                     /db_xref="GeneID:113482636"
                     /translation="
MNGKMSKANFEVCVSLQPLKMHCKSCALVTSSGHLLGSKQGDRIDETECVIRMNDAPTRGYGKDVGNKTSLRVIAHSSIQRILRNRNELLNMSHGAVFIFWGPSSYMRRDGKGLVYNNLQLMNQILPQLKAYMISRHKMLQFDDLFKRETGKDRKISNTWLSTGWFTMTIALELCDRINVYGMVPPDFCRDPNHLSVPYHYYEPLGPDECTMYISHERGRKGSHHRFITEKRVFENWARTFNIHFFQPDWKPEPLAVNHPEIKPVV"
     misc_feature    807..1373
                     /gene="ST6GALNAC5"
                     /note="Glycosyltransferase family 29 (sialyltransferase);
                     Region: Glyco_transf_29; pfam00777"
                     /db_xref="CDD:425864"
ORIGIN      
gttctcatgctgagcagcagatacacttacatactcctcttattgatacctatattggtggcatacttcagtaatatgatttatcattcattttcattttcatgaaagcttgttttactctcctgatttcattaggtcagccactcactgaacaggcacctcctgttccattttactgtgtaacttttaaacatgacctgataagctaggaaaagttcagtgcactaactcactgtcgtgtaaaatacacaaagacattaatgacctgctctgactgttgaaccacaaaggaggtacgagagccctgcagtggttatggcaccaacctggaaatagcatggaaggattggaccaaggtataattctcttcccttagcaaactgtcctgaccccaaggttgaaaagctattcacacctgtgcttatgaggacttacaattgattatttccgggaaaaatgaaaaatactccaattacagctcatttatggtaagtggaagaagtacaatcctgaacagctgggaacagtatagaagctgttgtgattattgtatatgaagcagccatggaaaggaggatttcaacagtggtcttcttaactccacagaggacctttaagggctacaccacattttccccatctacaaaaagtacaggtaatgtgtccccagttatttggtaagcctactgggagagatttatgtaaagtcctctgagatttttgctgtaaaataggccatgcacatgtaatacagttatcatgtaatgaatgggaagatgtctaaagctaattttgaagtatgtgtgtctttgcagcctttaaaaatgcactgcaagagttgtgcgttggtaaccagctctggacaccttctgggaagtaaacaaggtgacagaatcgacgagacagagtgcgtaatacgaatgaatgatgcacctactcgaggttatggaaaagatgttggaaacaaaacgagccttcgagtcattgcacactccagtattcagaggattctgcgaaatcgcaatgaactcttaaatatgagccacggtgctgtgtttatcttctggggtcccagcagctacatgaggagagatggtaaaggcttggtatataataacctgcagctgatgaatcagatactgcctcagttaaaagcatatatgatttctcgccacaagatgcttcaatttgatgacctttttaaacgggaaactgggaaagacaggaagatatccaacacttggcttagcacgggctggttcacaatgactatcgcattagagctctgtgacaggataaatgtttatggcatggtgccaccggatttctgcagggatcctaatcatctttcagtaccttatcattattatgaacctttgggacctgatgaatgcacaatgtacatttcacacgagcggggacgaaagggcagtcatcatcgtttcatcacagagaaacgagtgtttgagaactgggcacggacattcaatattcactttttccaaccagactggaaaccagaaccactcgctgtaaatcaccccgagattaaaccagtggtctgagggatgagtgcacaaggccacaaccacagccacctactgtgtcagccttgggggtgttggaccttctgggacagcaaggcaacctagaggagaagggtaacaggatttgcagccgataactgcaacagcagtcaggaagttacgagatgaaggagcagagcgtatcaagagtactttctatcgaactgtgtattaatccagtatatagcctcttctggccatctgacttcctgtgtgtgtatgtgatttgtgaaaaaaaaacggagtatcattaacggattgttaattcattatggttttttaaattacaatgccactgaattttcatagtgaaaacttaagtatttatttaatggaggtttttatgaaacctaggccagtatttttctaattcactgttatgtggttgtttatctttcataatctttcaaatccaaaattactattgctgatggtttgaaaggcctagctttttatttataaaatttgttttaaaagtatgattctatatagcatgtaatgaatatttgatctggaaatattgcattccttttaaaaattttgggctctgttccagcctaaagcctttaacagcaagaatggtcccatgtgcagatctagctaactttacattctgacatctcatgttaatatgaaaacggtggtgaaaattctgtttgatattaatgtgcatttgctgctgtgctatcaagctgctggttttttaattaggggtgggaggaaggagggcaaagttaatc
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]