2024-04-29 16:50:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026513067 1561 bp mRNA linear MAM 12-JUN-2023 DEFINITION PREDICTED: Ursus arctos homeobox B8 (HOXB8), transcript variant X1, mRNA. ACCESSION XM_026513067 VERSION XM_026513067.4 DBLINK BioProject: PRJNA832286 KEYWORDS RefSeq. SOURCE Ursus arctos (brown bear) ORGANISM Ursus arctos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_026622919) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 12, 2023 this sequence version replaced XM_026513067.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_023065955.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1561 /organism="Ursus arctos" /mol_type="mRNA" /isolate="Adak" /db_xref="taxon:9644" /chromosome="Unknown" /sex="male" /tissue_type="blood" /dev_stage="adult" /ecotype="North America" gene 1..1561 /gene="HOXB8" /note="homeobox B8; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins" /db_xref="GeneID:113265579" CDS 1..732 /gene="HOXB8" /codon_start=1 /product="homeobox protein Hox-B8 isoform X1" /protein_id="XP_026368852.1" /db_xref="GeneID:113265579" /translation="
MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKGDKK"
misc_feature order(439..453,457..459,508..510,526..528,565..567, 571..576,583..588,592..600,604..609) /gene="HOXB8" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(445..447,454..456,574..576,583..588,595..597) /gene="HOXB8" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 448..606 /gene="HOXB8" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
atgagctcttatttcgtcaactcactgttctccaaatacaaaaccggggagtccctgcgccccaattattatgactgcggcttcgcccaggacctgggcggccgacccaccgtggtgtacggtcccagcagcggcggcagcttccagcacccgtcgcaaatccaggagttctaccacgggccgtcgtcgctgtccaccgctccctaccagcagaacccgtgcgccgtggcgtgccacggggacccgggcaacttctacggctacgacccgttgcagcggcagagcctgttcggtgcgcaggatccagacctggtgcagtacgccgactgcaagctcgccgccgccagcggcctgggcgaggaggccgagggttcagagcagagtccgtcgcccacacagctcttcccctggatgcgcccgcaagcagccgccggacgcaggcgaggccgacagacctacagccgctaccagaccctggagctggagaaggagttcctatttaatccctatctgactcgcaagcggcggatcgaggtatcgcatgcgctgggactgacagagagacaggtcaaaatctggttccagaaccggaggatgaagtggaaaaaagagaacaacaaagacaagttccccagtagcaaatgcgagcaggaggagctggagaaacagaagctggagcgggccccggaggcggcggacgagggcgacgcgcagaagggcgacaagaagtaggctccagctgggactgccagggccgcggccgccctccgtccgtgggtcccccgaccacgccaccgccgtcgcccgcccccgcccgagagagctctggccccgcgagcggggcccggagcccggcctcccgctgcagcgtcccccgccgcgccagtccccgctagtggtagtatctcgtaatagcttctgtgtgtgagctgccgtggatctccttcccttctcttgggggccgggggggaaagaaaaggattttaagcaaggactccctcgccctgcgagggtgagcggctgcggcctggctgagccccccacgcccccgccccatgtaaaaagcctccttgtgcaatggtcttttttcctttgaacgtgcttctttgtaatgaccgaggtaccgatttctgctaagttctcccaacaacatgaaactgcctattcacgccgtaattctttctgtctccctctcctctctctctctctcttctctctctctctctctccgtcctcatttctccctcccaacccctctctccccgctgccctccctagctcgctggctttctctcttgcttctctcttttcctcccccccctttggtttggcaatttcgtcttaagtgtttctcaaaagaggttactttagttagcatgcgcgctgtgggcaattgttaaaagtgttcttaggtttactgtgaagagaatgtatcctgtatccgtgaattgctttattggggggtgggagggctaattatatattttgttgttcctctatactttgttctgttgtctgcgcctgaaaagggcggaagagttacaataaagtttacaagcga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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