LOCUS       XM_026071806            1320 bp    mRNA    linear   VRT 08-AUG-2018
DEFINITION  PREDICTED: Apteryx rowi homeobox B8 (HOXB8), transcript variant X1,
            mRNA.
ACCESSION   XM_026071806
VERSION     XM_026071806.1
DBLINK      BioProject: PRJNA484763
KEYWORDS    RefSeq.
SOURCE      Apteryx rowi (Okarito brown kiwi)
  ORGANISM  Apteryx rowi
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae;
            Apteryx.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_020449764.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Apteryx rowi Annotation Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Apteryx rowi"
                     /mol_type="mRNA"
                     /isolate="R43461"
                     /specimen_voucher="ROM:ORN:R43461"
                     /db_xref="taxon:308060"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /country="New Zealand: Okarito, Westland"
                     /collection_date="16-Jul-1993"
                     /collected_by="Royal Ontario Museum"
     gene            1..1320
                     /gene="HOXB8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 25 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:112968987"
     CDS             1..729
                     /gene="HOXB8"
                     /codon_start=1
                     /product="homeobox protein Hox-B8 isoform X1"
                     /protein_id="XP_025927591.1"
                     /db_xref="GeneID:112968987"
                     /translation="

MSSYFVNSLFSKYKTGDSLRPNYYDCGFAQELGGRPTVVYGPSAGGTFQHPPQIQEFYHGASSLSSSPYQQNPCAVACHGDPGNFYGYEPLQRQSLFAAQDSELVQYTDCKLAAGGLGEEAESAEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKMERAQEVDEEGEAQKADKK"

     misc_feature    order(436..450,454..456,505..507,523..525,562..564,
                     568..573,580..585,589..597,601..606)
                     /gene="HOXB8"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(442..444,451..453,571..573,580..585,592..594)
                     /gene="HOXB8"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    445..603
                     /gene="HOXB8"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

atgagctcttacttcgtcaactcactcttctccaaatacaaaaccggggactccttgcgtcccaactactatgactgcgggttcgcccaggagctcgggggcagacccacggtggtgtacggacccagcgcggggggcaccttccagcaccccccccagatccaggagttttaccacggcgcctcctcgctctccagctccccttaccaacagaatccctgcgccgtggcgtgccatggcgaccccggcaacttctacggctacgagcccttgcaaaggcagagcctcttcgccgcccaggactcggagctggtgcagtacacggactgcaagctggcggccggcggcctcggcgaggaggcggagagcgcggagcagagcccttcgcccacccagctcttcccctggatgcgaccgcaagcagccgctggacggaggagggggaggcaaacctacagccgctaccagacgctggaactggagaaggaatttctatttaatccctacctgacccgcaaacggaggatcgaggtctcgcatgccctgggattgacagaaaggcaggtcaaaatctggttccagaacaggaggatgaaatggaaaaaggaaaacaacaaagacaagtttcccagcagcaaatgcgagcaggaagaactggaaaaacagaaaatggaaagagcccaggaggtggacgaggaaggggaagcacagaaggcggacaagaaataaaaggatttttaaggactgaaaggcaagcgctgctggggtggaagagcccctgagtcccacattaatggcagttaatgtaagggaggggtgggaaaaaaacaacaatgcatagaaaagagaaagaaaaaaaaamccttttattgctgtaaaacaatatagctgtaagcaccactttcctgattatcctttgatacaatgaacagtatgcaaaagtgatctggaggtctctccagccttttgccagttattaactagtggtagtgtaacgcaatagcttatgtaaaacatgactgtgaaatcttctctctctctctgtccttctctctgtctctctcttctttcctggggggtgggttggttaacatagctttcaatgctataggagttatgtgaaattacatttgtgcacttttttaatttcccaccttttttgttgtggtttatctgtatgtactggaggtagctattgaaacaaacatcccaacaacatgaaactgcctatttatgctgtagttatctctctctttctctccctccctctctctttttactttccttacttctgttcttttgtttggttcgggatttttt

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