2024-05-19 04:49:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_024031335 732 bp mRNA linear PLN 15-FEB-2018 DEFINITION PREDICTED: Quercus suber uncharacterized membrane protein YuiD-like (LOC111999214), mRNA. ACCESSION XM_024031335 VERSION XM_024031335.1 DBLINK BioProject: PRJNA433227 KEYWORDS RefSeq. SOURCE Quercus suber ORGANISM Quercus suber Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_019822142.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Quercus suber Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..732 /organism="Quercus suber" /mol_type="mRNA" /isolate="HL8" /db_xref="taxon:58331" /chromosome="Unknown" /tissue_type="leaves" /country="Portugal:Montargil" gene 1..732 /gene="LOC111999214" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:111999214" CDS 430..630 /gene="LOC111999214" /codon_start=1 /product="uncharacterized protein LOC111999214" /protein_id="XP_023887103.1" /db_xref="GeneID:111999214" /translation="
MYDATGVRLHAGRQAELLNQIVCELPSEHPLSNIRPLRDSLGHTPLQVVAGAVLGCIIAYLMGNAK"
misc_feature <430..603 /gene="LOC111999214" /note="Divergent PAP2 family; Region: DUF212; cl23953" /db_xref="CDD:451626" ORIGIN
cctgattattcgcaattgttactgatttttgctctcactaagattagcaagttcagtattgttgctatgaatttcacttggactgcttctatttattcaataatggaggatattagggatctgggtttgatcagttttaaccataattgcaccttgcttctaagccgccattgccattgttgtacaagtcctttaaatttgtaattaaatagtgctttgagtttgaggttacataaatcagtccaaagtgtcaaacttctgtggaatttcaatactccatgtcccctaattccttgtttcatgatatcatgaatcttctcatctttttgttgtatctcatcattttgagaataggtttagtttactcaggaatagttactataaattcaagatggacatgattgattgttttaatatattttgcaggtgatgtatgatgccacgggggtcagacttcatgctggtcgtcaagcggaattgctgaatcaaattgtgtgtgagcttccttcagaacatcctttatccaacataagacctcttcgagattcactagggcatactccacttcaggttgttgctggtgctgtgttgggatgcataatagcatatctgatgggaaatgcgaaataggatatcaaatgaccaatattatttcccttgtcacgaatttggatacatgtaaactgcatacttgtaatctggttactcttatagtgaaaactactttgttca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]