GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-19 08:12:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_022781668             409 bp    mRNA    linear   PLN 12-OCT-2017
DEFINITION  PREDICTED: Vigna radiata var. radiata plasma membrane ATPase 2-like
            (LOC106763428), transcript variant X1, mRNA.
ACCESSION   XM_022781668
VERSION     XM_022781668.1
DBLINK      BioProject: PRJNA301363
KEYWORDS    RefSeq.
SOURCE      Vigna radiata var. radiata (mung bean)
  ORGANISM  Vigna radiata var. radiata
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50
            kb inversion clade; NPAAA clade; indigoferoid/millettioid clade;
            Phaseoleae; Vigna.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_028356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Vigna radiata Annotation Release 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Vigna radiata var. radiata"
                     /mol_type="mRNA"
                     /variety="radiata"
                     /cultivar="VC1973A"
                     /db_xref="taxon:3916"
                     /chromosome="6"
                     /tissue_type="leaf"
     gene            1..409
                     /gene="LOC106763428"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:106763428"
     CDS             161..406
                     /gene="LOC106763428"
                     /codon_start=1
                     /product="plasma membrane ATPase 2-like"
                     /protein_id="XP_022637389.1"
                     /db_xref="GeneID:106763428"
                     /translation="
MITEHKYEIVKRLQARKHICGMTGDGVNDAPALKKAGIGIVVADATDAARSASDIVLTEPGLSVIFIIVLVNVAPEKRIKY"
     misc_feature    <170..>355
                     /gene="LOC106763428"
                     /note="plasma-membrane proton-efflux P-type ATPase;
                     Region: ATPase-IIIA_H; TIGR01647"
                     /db_xref="CDD:273731"
ORIGIN      
cttggctttctccgttttatacaagacgttctagatggaaacaaagagagtataggtggcccatggcagtttattggcctttggcctctgtttgacccaccctaggcatgacagtgcagaaacaatacgcagggcacttaaccttggagtcaatgttaaaatgattacagagcacaagtacgagattgtgaaacgtttgcaagctaggaaacatatttgtggaatgactggtgatggagtgaatgacgcacctgcactcaagaaggccggcattggtatagttgttgctgacgcaactgatgcagctcggagtgcatctgatattgttttaacagaacctggccttagtgttattttcattattgtattagtgaatgttgctcctgaaaagagaataaaatattagttc
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]