2024-05-19 07:34:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021741226 2075 bp mRNA linear PLN 28-SEP-2021 DEFINITION PREDICTED: Manihot esculenta guanine nucleotide-binding protein subunit gamma 3 (LOC110603484), mRNA. ACCESSION XM_021741226 VERSION XM_021741226.2 DBLINK BioProject: PRJNA394209 KEYWORDS RefSeq. SOURCE Manihot esculenta (cassava) ORGANISM Manihot esculenta Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_035176.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 28, 2021 this sequence version replaced XM_021741226.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Manihot esculenta Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2075 /organism="Manihot esculenta" /mol_type="mRNA" /cultivar="AM560-2" /db_xref="taxon:3983" /chromosome="16" /tissue_type="leaf" /dev_stage="seedling" /country="Colombia" gene 1..2075 /gene="LOC110603484" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 53 samples with support for all annotated introns" /db_xref="GeneID:110603484" CDS 991..1887 /gene="LOC110603484" /codon_start=1 /product="guanine nucleotide-binding protein subunit gamma 3" /protein_id="XP_021596918.1" /db_xref="GeneID:110603484" /translation="
MAESYRVVTASKSGCSSSVPSLPPPRPKSPPKYPDLYGKRREMAKVQMLEREIGFLEEELKSVDSLQPASRCCKEVTEFVVANPDPLILTSRKNRRSCRFWKWLCGIPCFNFSWICCCCYSGCSFHIHLPRCCDCNCDCNPCDLCNCCSCFRCPAPKWRCCSFRSCCPCTCSSCCPCSCSDCCPCSCSCPCPCPCPCPCSCSCPCPCPCPCSCSCPKSSCCKNISCCSDCCRCGLPSCPDCSCCSCPKCSNCSCCTSLCCCPKWTCSAPKCPKRPKCPKVRLCCNCTKTSCNPCCLFF"
misc_feature 1126..1320 /gene="LOC110603484" /note="GGL domain; Region: G-gamma; pfam00631" /db_xref="CDD:425787" polyA_site 2075 /gene="LOC110603484" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
aatttgatgaaaggatgaaatcttggaggagatgaagaaatggcaaagattccaagcaaaaggcaaccaacaattggatcaaaacatcatcatattactaccgattttggtcatagtctctggtttgtctcaaaatcagagcagattccggggttcaaaaacccaactccgtcctccattacccaaatttaaaaaaaaaaaaaactttctctctctcctacgcagccatcacgtgtccatctcaggtactacatcgtgtttttcgcttggcctctgcaaccaccaccccaccagcgagacactggctcagaaaataatacacccacaccgcagagatattgcagagcaacagagaaggagcggagacttctgggctctcaaaaactcactcaaattcgatcaagactctttctttttaaaattttttttatcaagcaaaaaattttgcaaaatgggttcgtactcagagttgcaggcttttccaccagccgtctttaccattattaccactatcattattaccatgcacaaaggttgtgtctccagaaatatcagatctctccctctccacgcacagtctgtgataataatgactctctttttatccttattatctctctttttactctctcttaattctcccgttaatcttctctgcctgcaaccataatcgccttctgctataaatgacacatttacatccatgtactgctctgctctagtttcagctcctgccgctgctctctctttttttcctcctttcctttcttttcttttcttttctttttctcttctgcgttgcagatgatttaattactgcctctgccacactctaagctttcgtttgctatagcatttgcaacctaacgttacttctttgtcccttactatttgctacttggggttgctttgttacttcttcttcttcttgtactacttgcctgctctcattttcgcttcttcttttgagttttcttcgagaaaaataaaatggcagaaagttatagagtagtgacagcatccaagtcgggttgctcttcctcagtgccgtcgttgcctcctcctcgcccaaagtctccgcccaagtatcccgatttgtatggcaagcgcagggaaatggctaaggtgcagatgcttgagagagaaatcggttttctagaggaggaactaaaatctgttgacagcctccagcctgcatccagatgctgcaaagaggtcactgaatttgtggttgcaaacccagatcctttaatacttacaagtagaaagaatcgaaggtcttgtcgattttggaagtggctatgtggaataccctgctttaacttctcatggatttgttgttgctgctactcgggatgctcttttcacatacacttaccgcgctgctgcgactgcaactgtgactgtaatccgtgtgacctatgtaactgctgttcatgttttcgctgtccagcacccaagtggcggtgttgctctttccggagctgttgcccttgcacttgctcaagctgttgcccttgctcttgctcggactgttgcccatgctcttgctcttgtccttgcccttgcccttgcccttgcccttgctcttgctcttgcccttgcccttgcccttgcccttgctcttgctcctgtcctaaatccagttgctgtaaaaacatctcatgctgcagtgactgctgcagatgcggacttccctcgtgcccagattgctcttgctgttcatgcccaaaatgcagcaattgcagttgctgcacctcgttatgttgttgtcctaaatggacatgctctgctcctaaatgtccgaaacgccccaagtgtcctaaggtacgtctttgttgcaattgtacaaaaacatcttgtaatccatgttgtctattcttttagcataattaagttatgcagtattggagaaagccttatctccaataataccattcaatttctacagagagtttaggaacttgtaatttattttgcttgcttgtttgttttcagcttcaaatatcctaagattttgctaataaacactcaaaaagccttgctcagtgattaatctgagatgatttatttca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]