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2024-05-19 07:01:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_021505067            1954 bp    mRNA    linear   INV 17-JUN-2017
DEFINITION  PREDICTED: Mizuhopecten yessoensis agrin-like (LOC110455117),
            transcript variant X2, mRNA.
ACCESSION   XM_021505067
VERSION     XM_021505067.1
DBLINK      BioProject: PRJNA390633
KEYWORDS    RefSeq.
SOURCE      Mizuhopecten yessoensis (Yesso scallop)
  ORGANISM  Mizuhopecten yessoensis
            Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia;
            Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae;
            Mizuhopecten.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_018407394.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Mizuhopecten yessoensis Annotation
                                           Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1954
                     /organism="Mizuhopecten yessoensis"
                     /mol_type="mRNA"
                     /strain="PY_sf001"
                     /db_xref="taxon:6573"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="whole organism"
     gene            1..1954
                     /gene="LOC110455117"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:110455117"
     CDS             66..1592
                     /gene="LOC110455117"
                     /codon_start=1
                     /product="agrin-like"
                     /protein_id="XP_021360742.1"
                     /db_xref="GeneID:110455117"
                     /translation="
MSVMMSYILSVVGLSLLLAPLVVDCQKTCNATSGRVCGAKFTTKTFKNECKVKRKFNVIYSGKCSGDCVCQQDYTPVCGVDGKTYSNDCSAGCKGVAVACIGKCPCDCICTREFAPVCGVNGETYGNACVAGCHGVAIKCKGKCPCPCICTLEYNPVCGADGNTYSNKCGADCAGVAVNCVGKCPCDCVCTLQYDPVCGTDGKTYGNECFATKCHGVGIACKEKCPCPCICTADYNPVCGVDGKTYSNTCRAGCAGVAVNCVGKCPCGCKCTLQYDPVCGIDGNTYGNECVATECHGVGIACKQKCPCPCFCPQVFIPVCGVDNKTYGNACEAACENVPVECAGECPCGCVCTKEYNPVCGYDGKTYGNPCMAKCQGAAIRCKQQCPCPCLCTKEFRPVCGVDGKTYDNKCLAAWNYTRVECSGPCPCNCKCPKVYIPVCGENGETYGNTCVATCLGVAIRCNGKCPCPCPCPKILAPVCGEDGETYNNKCLANCERVPVACTGRCPC"
     misc_feature    <255..515
                     /gene="LOC110455117"
                     /note="Major Facilitator Superfamily; Region: MFS;
                     cl28910"
                     /db_xref="CDD:452895"
     misc_feature    501..>587
                     /gene="LOC110455117"
                     /note="Kazal type serine protease inhibitors and
                     follistatin-like domains. Kazal inhibitors inhibit serine
                     proteases, such as, trypsin, chyomotrypsin, avian
                     ovomucoids, and elastases. The inhibitory domain has one
                     reactive site peptide bond, which serves the...; Region:
                     KAZAL_FS; cl00097"
                     /db_xref="CDD:412159"
     misc_feature    621..>695
                     /gene="LOC110455117"
                     /note="Kazal type serine protease inhibitors; Region:
                     KAZAL; smart00280"
                     /db_xref="CDD:197624"
     misc_feature    <726..935
                     /gene="LOC110455117"
                     /note="Major Facilitator Superfamily; Region: MFS;
                     cl28910"
                     /db_xref="CDD:452895"
     misc_feature    <999..1367
                     /gene="LOC110455117"
                     /note="Major Facilitator Superfamily; Region: MFS;
                     cl28910"
                     /db_xref="CDD:452895"
     misc_feature    <1338..1430
                     /gene="LOC110455117"
                     /note="Major Facilitator Superfamily; Region: MFS;
                     cl28910"
                     /db_xref="CDD:452895"
ORIGIN      
cctgtcggtggcgctcgcaagtttggagagtacagaaccgtttgttggattataaagctttacagatgtcagtgatgatgtcatatatcttgagtgtggtaggactgtcgctccttctcgcacctctggttgttgattgtcaaaaaacatgtaacgcaacaagcgggcgtgtctgtggtgcaaaatttactacaaagacgtttaagaacgaatgcaaagttaaaaggaagttcaacgttatctattccggaaaatgtagtggagactgcgtttgtcagcaggattataccccagtatgtggagtagatggcaaaacgtacagcaacgactgttccgctggctgcaagggtgttgcagtagcttgcatcgggaaatgtccatgtgactgtatctgcacccgcgagtttgctcccgtttgtggtgtgaatggcgagacctatggtaacgcatgtgttgcaggatgtcatggtgttgcaatcaaatgtaaggggaagtgcccgtgtccgtgtatttgcacactagagtataaccccgtatgtggagcggacggcaacacctacagcaacaagtgtggcgcggactgtgctggtgttgctgtgaattgtgtcggtaaatgtccatgtgactgtgtgtgtaccttacaatacgatcctgtttgtggaacagatgggaagacttacggtaacgaatgcttcgcaacaaaatgtcatggtgttgggattgcctgcaaagagaaatgcccctgtccgtgtatttgtacagcagattataacccggtgtgtggggtggacggcaaaacctacagcaacacgtgtcgcgctggctgtgctggtgttgctgtgaactgtgtcggtaaatgtccatgtggctgtaaatgtaccttacaatacgatcctgtttgtggaatagacgggaacacgtacggcaacgaatgcgtcgcaacagagtgtcacggcgttggcattgcatgcaagcagaagtgcccttgtccatgtttctgcccacaagtgtttatcccggtatgtggggtggacaataaaacatacggaaacgcgtgtgaagcagcatgtgagaatgtacctgtggaatgtgctggcgaatgcccctgtggctgcgtttgtactaaagagtataacccggtgtgtgggtacgatggtaagacgtacggaaacccatgcatggcaaaatgtcaaggtgcggccatacgatgtaaacaacaatgtccctgcccatgtttgtgtacgaaagagttccgaccagtgtgcggtgttgacgggaaaacatatgataacaaatgtttagcagcttggaactatacccgtgttgagtgttccggcccatgtccttgtaattgtaaatgcccgaaagtctacatcccagtttgtggagaaaatggggaaacgtacggaaacacatgcgtagctacatgtctaggcgtagccattcgctgcaacgggaaatgtccatgtccatgtccatgtccaaaaatattggctccagtgtgtggtgaagatggagaaacgtacaacaataaatgccttgccaattgcgagagggtacctgttgcatgtacagggagatgcccatgctgaagaggttaacctatacagatacatgatatgcatgctagatgcaggaatgccacggttctctgcgttcctatcttggaagaacagttggaaaatgcggaattgcatgtgaatttcacaaaatcgtacgctacaaataaacagttatttgaatttattttagtattatttatcattgaattaatcaccacacgagaataaatgctatttctagatatagatatacacaaaaacttatacatttactgccaaaccatccagatttaagatctcactcaagtaacaagtaacgtttatgtttttttcttgtctgcaatcattcaaccaccttagatttttgcaaagaaaaaaatcatattgcttag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]