2024-05-19 09:06:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021123784 646 bp mRNA linear PLN 13-MAY-2017 DEFINITION PREDICTED: Arachis ipaensis plasma membrane ATPase 2-like (LOC107641863), mRNA. ACCESSION XM_021123784 VERSION XM_021123784.1 DBLINK BioProject: PRJNA316874 KEYWORDS RefSeq; includes ab initio. SOURCE Arachis ipaensis ORGANISM Arachis ipaensis Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; dalbergioids sensu lato; Dalbergieae; Pterocarpus clade; Arachis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029789.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Arachis ipaensis Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 10% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..646 /organism="Arachis ipaensis" /mol_type="mRNA" /cultivar="K30076" /db_xref="taxon:130454" /chromosome="B05" /tissue_type="whole plant" /country="Bolivia: Tarija, Quebrada de Thaiguate (30 km N of Villa Montes)" /collection_date="2012" gene 1..646 /gene="LOC107641863" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 95% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns" /db_xref="GeneID:107641863" CDS 386..646 /gene="LOC107641863" /codon_start=1 /product="plasma membrane ATPase 2-like" /protein_id="XP_020979443.1" /db_xref="GeneID:107641863" /translation="
MVPSSSRRTRLVAGCKHSKLLKKGAITKRMTVIKEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFADGVNQDIVVQLYLWLQGHQG"
misc_feature <440..>610 /gene="LOC107641863" /note="plasma-membrane proton-efflux P-type ATPase; Region: ATPase-IIIA_H; TIGR01647" /db_xref="CDD:273731" ORIGIN
ccccatttttccctctccagcgcacacaacacaatactcacacgcaccacctcacccacgcggaagaggagagctcgaggaaggagacgccgccttgctgccagctccgtcgaagaccagcccgccaccgctgtcgagtcaaactcgagagagagtgtgtgcaacgatgagagaggaggagccgccaccgaggaggggaaagaggagctgctccctcgccagtcaccgtcatgcttcctggttgccgatgagggagccgcgagatccgttgccatcgcgagaagggggacacgcgagagggagccctcagtgtgatcgctgtcgcagctgaaatcaaaattttacagattcgacaaggaagggaaccggtggaaggagagaaccgatggtaccgtcaagttcccgaagaacaaggttagtagcaggctgtaagcactccaaattattgaaaaagggtgctataacaaagagaatgactgtaattaaagaaatggccggaatggatgtcctatgcagtgataaaacaggcacattaactctcaacaagcttacagtggacaagaatctaattgaggtctttgctgatggagttaatcaggacatagttgtacagttgtacttatggctacaagggcatcaaggctag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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