2024-05-19 03:52:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_021046986 1636 bp mRNA linear INV 21-NOV-2023 DEFINITION PREDICTED: Exaiptasia diaphana vegetative cell wall protein gp1 (LOC110241140), mRNA. ACCESSION XM_021046986 VERSION XM_021046986.2 DBLINK BioProject: PRJNA386175 KEYWORDS RefSeq. SOURCE Exaiptasia diaphana ORGANISM Exaiptasia diaphana Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Aiptasiidae; Exaiptasia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_018385916.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 17, 2019 this sequence version replaced XM_021046986.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_001417965.1-RS_2023_11 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 11/03/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1636 /organism="Exaiptasia diaphana" /mol_type="mRNA" /isolate="CC7" /isolation_source="whole animal" /db_xref="taxon:2652724" /chromosome="Unknown" /country="Saudi Arabia: KAUST" /collection_date="Mar-2014" gene 1..1636 /gene="LOC110241140" /note="vegetative cell wall protein gp1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:110241140" CDS 7..1497 /gene="LOC110241140" /codon_start=1 /product="vegetative cell wall protein gp1" /protein_id="XP_020902645.1" /db_xref="GeneID:110241140" /translation="
MASLGQYMGFALLLILHNQSAARGHGKRVKINGEDSNFKESKLXESSLKVNERTNAIANXVPGGSDTDKGHGKXSTLLSGSTWSKASNGVAGSTGLKPGSTPGFGELSKLVGTSGKVLDDDISQIYEKIVHPKFPKQYPCSSPASNKCKKCTSTAACPCPAPAPTPCTVSSSSPCPAPAPSPCPSTEPCPCPSPCPPPCLPPCPPPCPPPCPPPPCLPPPDPPTTVPTTKPTTDPTTAGTTPTPTKPTPDPTPPPVESPYPCPCPCPCPCPCPCPAPCPCPAPCPSPTPSPSPAPCPVPSXCSPCCTPCPTPSPSPSPSPSNPSPSPCPSPSPSPSSSNPFPKPCNCLSPSTSRSPCPXPSPSPTPNPSPALNPCPCPCPAPSPXPNPSPYPSPSPNPSPTPYPCPCPCPSPLPSPSPSPNPSPYPSPSPNPSPTHYPCPCPCPSPSPSYSPTHRPSYSPFLPARLASSRNRDPSQSPYIYLDGTPKEYHWKTILN"
ORIGIN
ccgaagatggcttctcttggccagtacatgggttttgcactgctacttattttgcataatcaaagtgcggcacgtgggcatggaaaaagagtaaaaataaacggggaagattccaacttcaaagaatccaaattgmaagaatccagcttgaaagtaaatgaaagaacaaatgctatagcgaacgrggtaccaggaggaagcgacacggacaagggtcacggaaaagrgtctactttactttccggatctacttggtctaaggcatctaatggagttgctggatctactggattaaaacctggatctacgcctggatttggtgagctttcaaaacttgtcggtacttcaggaaaggtgctggacgatgatatttcacaaatttatgaaaagatcgtgcatcccaagtttccaaaacaatatccctgttcatcgccagcatcaaacaagtgcaagaaatgtacgtctacagcggcctgtccatgtcctgctccagcgcctaccccgtgtactgtttcatcgtccagcccgtgtcctgctccagcgccttccccgtgtccctctacggagccctgtccatgtccttcaccttgtcctccaccctgtcttccaccctgtcctccaccctgtcctccaccctgtccgccaccaccgtgtcttcctcctcctgatcctccaacaacagttcctacgacaaaacctacaactgatcctacgacagctggaactactcctactcctacaaaacctacaccagatcctacacctccacctgtcgagtcaccctatccatgtccatgcccttgtccttgcccatgtccttgtccttgtccagcaccatgtccttgtcctgcaccatgtccctcgccaactccatctcctagtccagcaccttgyccggtaccttctmcatgttctccatgttgtactccatgtccaaccccatctccctcaccctcgccttctccttcaaatccttccccgtcgccatgtccgtctccttcaccatctccatcatcttcaaacccttttccaaaaccttgcaattgtctgtctccttcaacttcccggtctccttgtccttstccatccccatctccaacacctaatccttctccagcactaaatccatgtccttgtccatgtcctgcaccatctccgcmccctaatccttccccctatccatctccgtctcctaatccatctccgacaccttatccatgtccttgtccgtgtccttcaccattaccatcaccatctccgtcccccaatccttctccctatccatctccgtctcctaatccatctccaacacattatccatgcccatgcccatgtccttcaccatctccttcctattctccaactcatcgtccatcctattctccatttcttcctgcaaggctagcttcatctcgtaatcgagatccttcccagtctccatacatatatctggatggcactccgaaagagtatcactggaaaacaatmttgaattgaacttgagcatggtgtgggatgaataagttaccatgatctgtctccagggtcgtgcaccaactcagtatctattgcaaagctatagctgttaggatgactctaaataaaaccaaatctaattaaacattatgtaaattag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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