LOCUS       XM_019980446            1213 bp    mRNA    linear   MAM 12-JAN-2017
DEFINITION  PREDICTED: Bos indicus homeobox B8 (HOXB8), partial mRNA.
ACCESSION   XM_019980446
VERSION     XM_019980446.1
DBLINK      BioProject: PRJNA360096
KEYWORDS    RefSeq.
SOURCE      Bos indicus (Bos taurus indicus)
  ORGANISM  Bos indicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia;
            Pecora; Bovidae; Bovinae; Bos.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_032668.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Bos indicus Annotation Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..1213
                     /organism="Bos indicus"
                     /mol_type="mRNA"
                     /isolate="QUIL7308"
                     /db_xref="taxon:9915"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="peripheral blood mononuclear cells"
                     /country="Brazil"
                     /breed="Nelore"
                     /note="animal owned by Agropecuaria Quilombo Inc."
     gene            <1..1213
                     /gene="HOXB8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 ESTs, 2 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:109573280"
     CDS             <1..339
                     /gene="HOXB8"
                     /codon_start=1
                     /product="homeobox protein Hox-B8"
                     /protein_id="XP_019836005.1"
                     /db_xref="GeneID:109573280"
                     /translation="

PSVSPFPLLPAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKGDKK"

     misc_feature    order(46..60,64..66,115..117,133..135,172..174,178..183,
                     190..195,199..207,211..216)
                     /gene="HOXB8"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(52..54,61..63,181..183,190..195,202..204)
                     /gene="HOXB8"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    55..213
                     /gene="HOXB8"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

ccctctgtctcgccctttcccctattgccagcagccgccggacgcaggcgaggccgacagacctacagccgctaccagaccctggagctggagaaggagttcctatttaatccctatctgactcgcaagcggcggatcgaggtatcgcatgcactgggactgacagagagacaggtcaaaatttggttccagaaccggaggatgaagtggaaaaaagagaacaacaaagacaagttccccagcagcaaatgcgagcaggaggagctggagaaacagaagctggagcgggccccggaggcggcggacgagggagacgcgcagaagggcgacaagaagtaggctccagctgggactgccagggccgcggccgccctgcggccgccggtcccccgaannnnnnnnnnnngcccgcccccgcccgagagagctctggccccgcgagaggggcccggagcctggcctcccaccgcagcgtccccgccgcgccagtccccgctagtggtagtatctcgtaatagcttctgtgtgtgagctaccgtggatctccttcccttctcttgggggccagggggaaagaaaagaattttaagcatggactccctcgccctgcgagggtaagcggctgcggcctggctgagcaccccccccccacgcccccgccccgtgtaaaaagcctccttgtgcaatggtctttttttcctttgaacgtgcttctttgtaatgaccgaggtaccgatttctgctaagttctcccaacaacatgaaactgcctattcacgccgtaattctttctgtctccctccctctcttttctctctctttctctctctctctctctctctctctctctcgccttgtcctcatttcccctcccatcccccctccccgctgtccttcctagctcgctggctttctctggcttctctcttttcctccacccccccacccccccgcgcccgccgctttggtttgacaatttcgtcttaagtgtttctcaaaagaggttactttagttagcatgcgcgctgtgggcaattgttaaaagtgttcttaggtttactgtgaagagaatgtatcctgtatccgtgaattgctttattggggggagggagggctaattatatattttgttgttcctctatactttgttctgttgtctgcgcctgaaaagggcggaagagttacaataaagtttacaagcgagaacccgaga

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