2024-05-19 04:16:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_019174041 3708 bp mRNA linear PLN 28-AUG-2017 DEFINITION Tsuchiyaea wingfieldii CBS 7118 hypothetical protein (L198_01882), partial mRNA. ACCESSION XM_019174041 VERSION XM_019174041.1 DBLINK BioProject: PRJNA352843 BioSample: SAMN02086247 KEYWORDS RefSeq. SOURCE Cryptococcus wingfieldii CBS 7118 ORGANISM Cryptococcus wingfieldii CBS 7118 Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus. REFERENCE 1 (bases 1 to 3708) AUTHORS Cuomo,C., Litvintseva,A., Heitman,J., Chen,Y., Sun,S., Springer,D., Dromer,F., Young,S., Zeng,Q., Chapman,S., Gujja,S., Saif,S. and Birren,B. TITLE Evolution of pathogenesis and genome organization in the Tremellales JOURNAL Unpublished REFERENCE 2 (bases 1 to 3708) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-AUG-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3708) AUTHORS Cuomo,C., Litvintseva,A., Heitman,J., Chen,Y., Sun,S., Springer,D., Dromer,F., Young,S., Zeng,Q., Chapman,S., Gujja,S., Saif,S. and Birren,B. TITLE Direct Submission JOURNAL Submitted (20-JUN-2016) Genome Sequencing and Analysis Program, Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA 02142, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_017567030). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3708 /organism="Cryptococcus wingfieldii CBS 7118" /mol_type="mRNA" /strain="CBS 7118" /culture_collection="CBS:7118" /type_material="culture from type material of Sterigmatomyces wingfieldii" /db_xref="taxon:1295528" /chromosome="Unknown" /country="South Africa" /collection_date="1987" gene <1..>3708 /locus_tag="L198_01882" /db_xref="GeneID:30191095" CDS 1..3708 /locus_tag="L198_01882" /codon_start=1 /product="hypothetical protein" /protein_id="XP_019033848.1" /db_xref="GeneID:30191095" /translation="
MSALPTTTLLVANMHCTSCCDAIDSLLATLPPVRNVSTSLLQRTVTFSVDTNAAHSSSKGPPSVPRVIDQVVHKLTGEGGFAIEADDEAEHPPAREAPSLLGRLGLQTRRGRERKRAEDRRRRHLEHCEVCQAQEREQVERSSPLSTPSHSLQAPLAPQNASQHDGIVKTTLSIEGMTCASCTSAITNALNDNPDIEQVDINLLNSSGVVRHKALLPATDIAEMVSDIGYETEVVESHSETSVAPSAPDSQVKTVLSIEGMTCASCSSAITDGLSKHPNVASVEINLLGSSGVVLHNQSLTPDDVKDIVDDLGYDAQVVSSETAVERKRDAKIKSTFAIEGMTCASCSGAINSAFRGMEGIESCDIDLLNNRGVIVHASNITAGDLAEQIEDLGYGAEISTSEPVSLQSKGKDKEETLQRTVKIHVEGLFCHQCVSKINHHLSTLPLLSHSDIALHPSIITVTYVPHDPLTIRDILEGLTGLAPEFEASVFKAPSLSERSRDIQKKEVRMLARHLAVAVVFAIPTFVIAIVGMVLLKGHDAFKMKMMESTWGAANLGTVILWPLATVVQFGVGRRLPKRPLTWRSAFSFGSMDLLVVLSTTVSYFASIAMLAIDVQNPSGTDSVGTYFDSCVFLIMFILLGRTLEAYAKSRTTDAVSLLGGLRPDTALLVGETSHSTDGSPGSSATPQSRKIPIDHLEIGDLLLLPPGSLPPTDALLVSGTTTFDESSLTGESKPIHKHPGDEIFTGTVNLSSAVTVRVLRLGGDTMIEKIIRAVSDAASRKAPLEKLAEKLTGVFVPVIVYLSLIVLAVWLPLALTNTVEPHSVAGGKVFFALEFAISTLVVACPCGIGLAVPCANAVGNGVAAKAGILASGGGEAFLGATKISRVVFDKTGTLTVGRSEVMNEVWEGAASGDKENRQRILKGVLELERASTHPLAVGMVEYLEKSPLAPSGERVEVVDTEEIAGRGLKASLRIGQISIDLLVGNVALMTDHNVEISEQAHVTVSTWSTEAKSVILIAMSDAPGSYALSALYSLSDHPRPEAAEVIAFLRKRGIAVNMLSGDNETTARAVGKMVGLGENEVKGGVGPKGKAETIRIFQAGEGANEKMQGKDESRKDVVMFIGDGLNDAVALAAADVSVAMGHGSQATLASADFVLLSSSLNSLVPLLRISRKVINRQKLNLGWAIIFNVVCLPFAAGVFYGAGKIRLTPVWSAVLMALSSVSVVCSSLAMRWGL"
misc_feature 22..222 /locus_tag="L198_01882" /note="Heavy-metal-associated domain; Region: HMA; pfam00403" /db_xref="CDD:425665" misc_feature order(40..48,55..57) /locus_tag="L198_01882" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 511..699 /locus_tag="L198_01882" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(529..537,544..546) /locus_tag="L198_01882" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 763..948 /locus_tag="L198_01882" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(781..789,796..798) /locus_tag="L198_01882" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1006..1194 /locus_tag="L198_01882" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1024..1032,1039..1041) /locus_tag="L198_01882" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1537..3666 /locus_tag="L198_01882" /note="Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl21460" /db_xref="CDD:451251" misc_feature order(2668..2682,3181..3186,3271..3273,3367..3372, 3379..3384) /locus_tag="L198_01882" /note="active site" /db_xref="CDD:319763" ORIGIN
atgtcggcgctccccaccaccaccctcctcgtcgccaacatgcactgcacctcctgctgcgacgccatcgactccctcctcgccaccctccccccagtccgcaacgtctccacctccctcctccaacgcacagtcaccttctccgtagacacaaatgccgcccactcctcctccaagggtcccccgtctgtccccagggtcatagaccaggtcgtccacaagctgaccggcgaaggtggctttgctatcgaggcagatgacgaagcggaacatcctcctgcgcgagaagccccgagtctgctcggaagactgggactgcagactcgacgcggaagagaaaggaaacgcgccgaagacaggcgcaggcgtcatcttgaacactgtgaagtctgccaagcccaagagcgagagcaagtcgaaagatcttctcctttgagtacgccttcacactctcttcaagcaccgctcgccccccaaaatgcctcgcaacacgatgggatagtcaagaccacattgtctatcgagggaatgacctgcgcctcgtgcacgtctgccatcaccaatgcgctcaacgataatcccgacattgagcaggtggatataaacctcctcaactcgtccggtgtcgtgcgccacaaagccttgttgcccgctaccgacattgcagagatggttagtgacattgggtatgagaccgaggtcgtcgagtcgcacagcgagacctctgtggccccatcggcccctgactcccaggtcaagacggttctgtcgatcgagggcatgacatgtgcttcctgctcttcagccatcacagacgggctgtccaagcaccccaacgttgcgtccgtcgagatcaacctcttgggatcgtctggtgtcgtattgcacaaccaatctctcactcccgacgacgtcaaggacatcgttgatgatcttggctacgacgctcaagttgtcagctcggagacggcagtcgagagaaaaagggacgccaaaatcaagtcaacttttgccatcgaaggcatgacatgcgcctcttgctctggcgctatcaactctgcgttcagaggcatggaaggcattgaatcctgcgacattgatcttctcaacaaccgcggtgtgatcgttcatgcgagcaacattaccgctggcgatcttgcagaacagattgaggatcttggctatggcgcagagatctccacgtctgagcccgtatctctccagagcaaaggcaaagacaaggaggagactttgcagaggaccgtcaaaattcacgtcgaaggactcttttgccaccaatgcgtctctaaaatcaaccaccatctttcaacccttcccctcttatctcacagtgatatagcactccatccgtccatcatcaccgtcacttatgtaccccatgatcctctgacgatcagggacattttggaaggtttgacagggctggcgccagagtttgaagcgtcagtctttaaagcgcccagcttgagtgagaggagtagggacattcaaaagaaggaagtcagaatgctggcaaggcatttagcagtagcagtcgtctttgccatcccgactttcgtcattgcgatcgtgggtatggtgctcctgaaaggtcacgatgccttcaagatgaagatgatggaatccacgtggggtgcggctaatcttggcactgtcatactttggcccctcgcgactgtggtccagtttggagttggcaggcgactacctaaaagacctctgacctggcgttctgctttcagctttggtagcatggacctactcgttgtactttccaccacggtctcttactttgcctctatcgccatgctcgccatcgacgttcaaaacccgtctggtacagacagcgtcggcacgtactttgacagctgcgtcttcctgatcatgtttatcctcctaggcagaactctggaagcgtatgcgaagagtagaacgacggatgctgtcagtttattaggaggactgaggccggatacggcgctgcttgtcggggaaacttcgcactcgacagatggctctcccggatcgtctgccacccctcaatctcgcaaaattcccatcgaccacctcgagattggagatcttctccttctccctccaggttcccttcctccaacagacgccctcttggtgtcgggcaccaccacctttgacgaatcttcgctcacgggagagtccaaacccatccacaagcaccccggagacgaaattttcaccggtacagtcaacttgtcctcggccgtcactgtccgtgtcttgaggctaggtggagatacaatgattgagaagatcatccgtgccgtttcagacgctgcttccaggaaagctccgctggaaaagctcgcggaaaaactcactggtgtctttgtgcccgtcattgtctacctctctctcatagtgctcgcggtttggcttccgctcgcgttgaccaacactgtcgagcctcattctgttgccggtggcaaagtattctttgctctagaattcgccatctccaccctggtagtcgcttgtccatgtggcattggtctcgctgtgccctgtgccaacgctgtaggcaacggtgtcgctgctaaggccggtatccttgcgagtggtggaggcgaggcattcctgggggctaccaaaatctccagggtagtattcgacaagactgggacgttgacggtcggaaggagtgaggtcatgaatgaggtttgggagggtgcagcgagtggtgacaaggagaacaggcagaggattctaaagggtgtgttggagctggagagggcaagtacacatcctctcgccgtggggatggtcgagtatcttgaaaagagccccttggccccgagcggagaaagagtggaagtcgtggatacggaagagattgccggtaggggcttgaaggctagtcttcggattgggcagatttctatcgacctcctcgtcggcaatgtcgctctcatgaccgaccacaatgttgagattagcgagcaagcccatgtgacagtatccacttggtccactgaagccaagtcggtcatcctcatcgccatgtccgacgctcctggttcatatgcgctctcagcactctactctctctccgaccaccctcgcccagaagctgctgaagtgattgctttcttgaggaaacggggtattgctgtcaacatgctttctggtgataatgaaaccaccgcaagggctgtaggcaaaatggtcgggcttggcgagaacgaagtcaagggcggagttgggccgaagggcaaggcggaaaccatcagaatcttccaggctggtgaaggggcaaacgagaaaatgcaaggaaaagacgagagtcgcaaagatgtggtgatgtttattggagatggactcaatgacgcggtggcgctcgcggctgccgatgtctctgtagcaatgggtcacggctctcaagccacactcgcctcggcggactttgtcctgctctcctcttccctcaattccttggtcccccttctgcgcatctcccgtaaagtcatcaaccgccaaaagctcaacctaggttgggccatcatcttcaacgtggtctgcttgccgttcgcggcgggtgtgttttacggggcggggaagataagattgacacctgtgtggagtgcggtgctgatggcgttgagtagtgtcagtgtggtgtgtagtagtttagccatgagatggggcttataa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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