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2024-05-19 04:16:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_019174041            3708 bp    mRNA    linear   PLN 28-AUG-2017
DEFINITION  Tsuchiyaea wingfieldii CBS 7118 hypothetical protein (L198_01882),
            partial mRNA.
ACCESSION   XM_019174041
VERSION     XM_019174041.1
DBLINK      BioProject: PRJNA352843
            BioSample: SAMN02086247
KEYWORDS    RefSeq.
SOURCE      Cryptococcus wingfieldii CBS 7118
  ORGANISM  Cryptococcus wingfieldii CBS 7118
            Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina;
            Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus.
REFERENCE   1  (bases 1 to 3708)
  AUTHORS   Cuomo,C., Litvintseva,A., Heitman,J., Chen,Y., Sun,S., Springer,D.,
            Dromer,F., Young,S., Zeng,Q., Chapman,S., Gujja,S., Saif,S. and
            Birren,B.
  TITLE     Evolution of pathogenesis and genome organization in the
            Tremellales
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3708)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-AUG-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3708)
  AUTHORS   Cuomo,C., Litvintseva,A., Heitman,J., Chen,Y., Sun,S., Springer,D.,
            Dromer,F., Young,S., Zeng,Q., Chapman,S., Gujja,S., Saif,S. and
            Birren,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2016) Genome Sequencing and Analysis Program,
            Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA
            02142, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_017567030).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..3708
                     /organism="Cryptococcus wingfieldii CBS 7118"
                     /mol_type="mRNA"
                     /strain="CBS 7118"
                     /culture_collection="CBS:7118"
                     /type_material="culture from type material of
                     Sterigmatomyces wingfieldii"
                     /db_xref="taxon:1295528"
                     /chromosome="Unknown"
                     /country="South Africa"
                     /collection_date="1987"
     gene            <1..>3708
                     /locus_tag="L198_01882"
                     /db_xref="GeneID:30191095"
     CDS             1..3708
                     /locus_tag="L198_01882"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="XP_019033848.1"
                     /db_xref="GeneID:30191095"
                     /translation="
MSALPTTTLLVANMHCTSCCDAIDSLLATLPPVRNVSTSLLQRTVTFSVDTNAAHSSSKGPPSVPRVIDQVVHKLTGEGGFAIEADDEAEHPPAREAPSLLGRLGLQTRRGRERKRAEDRRRRHLEHCEVCQAQEREQVERSSPLSTPSHSLQAPLAPQNASQHDGIVKTTLSIEGMTCASCTSAITNALNDNPDIEQVDINLLNSSGVVRHKALLPATDIAEMVSDIGYETEVVESHSETSVAPSAPDSQVKTVLSIEGMTCASCSSAITDGLSKHPNVASVEINLLGSSGVVLHNQSLTPDDVKDIVDDLGYDAQVVSSETAVERKRDAKIKSTFAIEGMTCASCSGAINSAFRGMEGIESCDIDLLNNRGVIVHASNITAGDLAEQIEDLGYGAEISTSEPVSLQSKGKDKEETLQRTVKIHVEGLFCHQCVSKINHHLSTLPLLSHSDIALHPSIITVTYVPHDPLTIRDILEGLTGLAPEFEASVFKAPSLSERSRDIQKKEVRMLARHLAVAVVFAIPTFVIAIVGMVLLKGHDAFKMKMMESTWGAANLGTVILWPLATVVQFGVGRRLPKRPLTWRSAFSFGSMDLLVVLSTTVSYFASIAMLAIDVQNPSGTDSVGTYFDSCVFLIMFILLGRTLEAYAKSRTTDAVSLLGGLRPDTALLVGETSHSTDGSPGSSATPQSRKIPIDHLEIGDLLLLPPGSLPPTDALLVSGTTTFDESSLTGESKPIHKHPGDEIFTGTVNLSSAVTVRVLRLGGDTMIEKIIRAVSDAASRKAPLEKLAEKLTGVFVPVIVYLSLIVLAVWLPLALTNTVEPHSVAGGKVFFALEFAISTLVVACPCGIGLAVPCANAVGNGVAAKAGILASGGGEAFLGATKISRVVFDKTGTLTVGRSEVMNEVWEGAASGDKENRQRILKGVLELERASTHPLAVGMVEYLEKSPLAPSGERVEVVDTEEIAGRGLKASLRIGQISIDLLVGNVALMTDHNVEISEQAHVTVSTWSTEAKSVILIAMSDAPGSYALSALYSLSDHPRPEAAEVIAFLRKRGIAVNMLSGDNETTARAVGKMVGLGENEVKGGVGPKGKAETIRIFQAGEGANEKMQGKDESRKDVVMFIGDGLNDAVALAAADVSVAMGHGSQATLASADFVLLSSSLNSLVPLLRISRKVINRQKLNLGWAIIFNVVCLPFAAGVFYGAGKIRLTPVWSAVLMALSSVSVVCSSLAMRWGL"
     misc_feature    22..222
                     /locus_tag="L198_01882"
                     /note="Heavy-metal-associated domain; Region: HMA;
                     pfam00403"
                     /db_xref="CDD:425665"
     misc_feature    order(40..48,55..57)
                     /locus_tag="L198_01882"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    511..699
                     /locus_tag="L198_01882"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(529..537,544..546)
                     /locus_tag="L198_01882"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    763..948
                     /locus_tag="L198_01882"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(781..789,796..798)
                     /locus_tag="L198_01882"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1006..1194
                     /locus_tag="L198_01882"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1024..1032,1039..1041)
                     /locus_tag="L198_01882"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
     misc_feature    1537..3666
                     /locus_tag="L198_01882"
                     /note="Haloacid Dehalogenase-like Hydrolases; Region:
                     HAD_like; cl21460"
                     /db_xref="CDD:451251"
     misc_feature    order(2668..2682,3181..3186,3271..3273,3367..3372,
                     3379..3384)
                     /locus_tag="L198_01882"
                     /note="active site"
                     /db_xref="CDD:319763"
ORIGIN      
atgtcggcgctccccaccaccaccctcctcgtcgccaacatgcactgcacctcctgctgcgacgccatcgactccctcctcgccaccctccccccagtccgcaacgtctccacctccctcctccaacgcacagtcaccttctccgtagacacaaatgccgcccactcctcctccaagggtcccccgtctgtccccagggtcatagaccaggtcgtccacaagctgaccggcgaaggtggctttgctatcgaggcagatgacgaagcggaacatcctcctgcgcgagaagccccgagtctgctcggaagactgggactgcagactcgacgcggaagagaaaggaaacgcgccgaagacaggcgcaggcgtcatcttgaacactgtgaagtctgccaagcccaagagcgagagcaagtcgaaagatcttctcctttgagtacgccttcacactctcttcaagcaccgctcgccccccaaaatgcctcgcaacacgatgggatagtcaagaccacattgtctatcgagggaatgacctgcgcctcgtgcacgtctgccatcaccaatgcgctcaacgataatcccgacattgagcaggtggatataaacctcctcaactcgtccggtgtcgtgcgccacaaagccttgttgcccgctaccgacattgcagagatggttagtgacattgggtatgagaccgaggtcgtcgagtcgcacagcgagacctctgtggccccatcggcccctgactcccaggtcaagacggttctgtcgatcgagggcatgacatgtgcttcctgctcttcagccatcacagacgggctgtccaagcaccccaacgttgcgtccgtcgagatcaacctcttgggatcgtctggtgtcgtattgcacaaccaatctctcactcccgacgacgtcaaggacatcgttgatgatcttggctacgacgctcaagttgtcagctcggagacggcagtcgagagaaaaagggacgccaaaatcaagtcaacttttgccatcgaaggcatgacatgcgcctcttgctctggcgctatcaactctgcgttcagaggcatggaaggcattgaatcctgcgacattgatcttctcaacaaccgcggtgtgatcgttcatgcgagcaacattaccgctggcgatcttgcagaacagattgaggatcttggctatggcgcagagatctccacgtctgagcccgtatctctccagagcaaaggcaaagacaaggaggagactttgcagaggaccgtcaaaattcacgtcgaaggactcttttgccaccaatgcgtctctaaaatcaaccaccatctttcaacccttcccctcttatctcacagtgatatagcactccatccgtccatcatcaccgtcacttatgtaccccatgatcctctgacgatcagggacattttggaaggtttgacagggctggcgccagagtttgaagcgtcagtctttaaagcgcccagcttgagtgagaggagtagggacattcaaaagaaggaagtcagaatgctggcaaggcatttagcagtagcagtcgtctttgccatcccgactttcgtcattgcgatcgtgggtatggtgctcctgaaaggtcacgatgccttcaagatgaagatgatggaatccacgtggggtgcggctaatcttggcactgtcatactttggcccctcgcgactgtggtccagtttggagttggcaggcgactacctaaaagacctctgacctggcgttctgctttcagctttggtagcatggacctactcgttgtactttccaccacggtctcttactttgcctctatcgccatgctcgccatcgacgttcaaaacccgtctggtacagacagcgtcggcacgtactttgacagctgcgtcttcctgatcatgtttatcctcctaggcagaactctggaagcgtatgcgaagagtagaacgacggatgctgtcagtttattaggaggactgaggccggatacggcgctgcttgtcggggaaacttcgcactcgacagatggctctcccggatcgtctgccacccctcaatctcgcaaaattcccatcgaccacctcgagattggagatcttctccttctccctccaggttcccttcctccaacagacgccctcttggtgtcgggcaccaccacctttgacgaatcttcgctcacgggagagtccaaacccatccacaagcaccccggagacgaaattttcaccggtacagtcaacttgtcctcggccgtcactgtccgtgtcttgaggctaggtggagatacaatgattgagaagatcatccgtgccgtttcagacgctgcttccaggaaagctccgctggaaaagctcgcggaaaaactcactggtgtctttgtgcccgtcattgtctacctctctctcatagtgctcgcggtttggcttccgctcgcgttgaccaacactgtcgagcctcattctgttgccggtggcaaagtattctttgctctagaattcgccatctccaccctggtagtcgcttgtccatgtggcattggtctcgctgtgccctgtgccaacgctgtaggcaacggtgtcgctgctaaggccggtatccttgcgagtggtggaggcgaggcattcctgggggctaccaaaatctccagggtagtattcgacaagactgggacgttgacggtcggaaggagtgaggtcatgaatgaggtttgggagggtgcagcgagtggtgacaaggagaacaggcagaggattctaaagggtgtgttggagctggagagggcaagtacacatcctctcgccgtggggatggtcgagtatcttgaaaagagccccttggccccgagcggagaaagagtggaagtcgtggatacggaagagattgccggtaggggcttgaaggctagtcttcggattgggcagatttctatcgacctcctcgtcggcaatgtcgctctcatgaccgaccacaatgttgagattagcgagcaagcccatgtgacagtatccacttggtccactgaagccaagtcggtcatcctcatcgccatgtccgacgctcctggttcatatgcgctctcagcactctactctctctccgaccaccctcgcccagaagctgctgaagtgattgctttcttgaggaaacggggtattgctgtcaacatgctttctggtgataatgaaaccaccgcaagggctgtaggcaaaatggtcgggcttggcgagaacgaagtcaagggcggagttgggccgaagggcaaggcggaaaccatcagaatcttccaggctggtgaaggggcaaacgagaaaatgcaaggaaaagacgagagtcgcaaagatgtggtgatgtttattggagatggactcaatgacgcggtggcgctcgcggctgccgatgtctctgtagcaatgggtcacggctctcaagccacactcgcctcggcggactttgtcctgctctcctcttccctcaattccttggtcccccttctgcgcatctcccgtaaagtcatcaaccgccaaaagctcaacctaggttgggccatcatcttcaacgtggtctgcttgccgttcgcggcgggtgtgttttacggggcggggaagataagattgacacctgtgtggagtgcggtgctgatggcgttgagtagtgtcagtgtggtgtgtagtagtttagccatgagatggggcttataa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]