2024-04-29 07:17:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_018565976 1324 bp mRNA linear VRT 30-SEP-2016 DEFINITION PREDICTED: Nanorana parkeri homeobox B8 (HOXB8), transcript variant X2, mRNA. ACCESSION XM_018565976 VERSION XM_018565976.1 DBLINK BioProject: PRJNA344660 KEYWORDS RefSeq. SOURCE Nanorana parkeri ORGANISM Nanorana parkeri Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Dicroglossidae; Dicroglossinae; Nanorana. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_017307173.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Nanorana parkeri Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1324 /organism="Nanorana parkeri" /mol_type="mRNA" /isolate="BGI_ZX_2015" /isolation_source="muscle sample" /db_xref="taxon:125878" /chromosome="Unknown" /sex="female" /country="China" /collection_date="Aug-2012" gene 1..1324 /gene="HOXB8" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:108794856" CDS 9..740 /gene="HOXB8" /codon_start=1 /product="homeobox protein Hox-B8 isoform X2" /protein_id="XP_018421478.1" /db_xref="GeneID:108794856" /translation="
MSSYFVNSLFSKYKAGESLRPNYYDCGFAQDLGGRPTVVYGPSAGGTFQHPSQIQDFYHGTSSLSSPPYQQNPCAVTCHGDPSSFYGYDPLQRQSLFSSQDSDLVQYTDCKLTSAGLGEEAESSEQSPSPTQLFPWMRPQAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKMERSQDTDEPLDGQKGEKSLD"
misc_feature order(441..455,459..461,510..512,528..530,567..569, 573..578,585..590,594..602,606..611) /gene="HOXB8" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(447..449,456..458,576..578,585..590,597..599) /gene="HOXB8" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 450..608 /gene="HOXB8" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
aaaaagaaatgagttcctattttgtcaattcactcttctccaagtacaaagcaggggaatctttgcgccccaattactatgattgtggctttgcccaggacctaggaggcagaccaacagtggtgtatggacccagtgctgggggcacttttcaacaccctagccaaattcaggacttttaccacggaacgtcgtccctttcctcgcccccttaccagcagaatccctgcgctgtaacctgtcatggggaccccagcagcttctacggatacgaccctttgcaaaggcagagcctgttcagcagccaggattcggatctagtgcaatacaccgactgtaagctgacctcagccggcctgggggaagaagcagagagctcagagcagagtccttcacccacacagctctttccctggatgagaccacaagccgctggacgcaggagaggtagacagacctacagccgctaccaaaccctggagctggagaaagaattcctcttcaacccttaccttacccgcaagcggcggattgaggtgtctcacgctttgggacttacggagagacaggttaaaatttggttccagaacaggaggatgaaatggaaaaaggagaacaacaaagataagttccccagcagcaaatgtgagcaggaggaactggagaaacagaaaatggagagatcacaagacactgatgagcctctggatggacaaaagggcgagaagagcctggactgagaagcccccattgataaagccacttgtctccagctctcccctgctgtcgtccaatgttcctggaattaagatacggaagggggcacaatgttgctgtaaaagatgtagctgtaaatcgccccttctctgtaaactcatcctgtttgatacctaaatgaccggtgcccctaagaaccaggaaacctgctgtcttcctacctggtaggggaaggggggaggtggggggagaggaaatgactttctagtgtctgtgtataacgcaatagcttttgtggatcataacttgggggttttgtttttttttggtggggaaggtttgctctagaagtttttgtgtgcactatttctctatgtggtttattgtattttctttctataaaacaacagacaaaaaaacagaccaacaacatgaaactgcctaattcagctgtagtcccccctctctaacacattgctagatgccccctcttgttttgtccctggcaccccgcattctctgtgtgtgcgaggatgtagttagcatgcgcccagtgaaaagccacttgtgattttttagggttactgtgaacagactgtatactgta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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