LOCUS       XM_018565975            1327 bp    mRNA    linear   VRT 30-SEP-2016
DEFINITION  PREDICTED: Nanorana parkeri homeobox B8 (HOXB8), transcript variant
            X1, mRNA.
ACCESSION   XM_018565975
VERSION     XM_018565975.1
DBLINK      BioProject: PRJNA344660
KEYWORDS    RefSeq.
SOURCE      Nanorana parkeri
  ORGANISM  Nanorana parkeri
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Neobatrachia; Ranoidea; Dicroglossidae;
            Dicroglossinae; Nanorana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_017307173.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Nanorana parkeri Annotation Release
                                           100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1327
                     /organism="Nanorana parkeri"
                     /mol_type="mRNA"
                     /isolate="BGI_ZX_2015"
                     /isolation_source="muscle sample"
                     /db_xref="taxon:125878"
                     /chromosome="Unknown"
                     /sex="female"
                     /country="China"
                     /collection_date="Aug-2012"
     gene            1..1327
                     /gene="HOXB8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 13 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:108794856"
     CDS             9..743
                     /gene="HOXB8"
                     /codon_start=1
                     /product="homeobox protein Hox-B8 isoform X1"
                     /protein_id="XP_018421477.1"
                     /db_xref="GeneID:108794856"
                     /translation="

MSSYFVNSLFSKYKAGESLRPNYYDCGFAQDLGGRPTVVYGPSAGGTFQHPSQIQDFYHGTSSLSSPPYQQNPCAVTCHGDPSSFYGYDPLQRQSLFSSQDSDLVQYTDCKLTSAGLGEEAESSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKMERSQDTDEPLDGQKGEKSLD"

     misc_feature    order(444..458,462..464,513..515,531..533,570..572,
                     576..581,588..593,597..605,609..614)
                     /gene="HOXB8"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(450..452,459..461,579..581,588..593,600..602)
                     /gene="HOXB8"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    453..611
                     /gene="HOXB8"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

aaaaagaaatgagttcctattttgtcaattcactcttctccaagtacaaagcaggggaatctttgcgccccaattactatgattgtggctttgcccaggacctaggaggcagaccaacagtggtgtatggacccagtgctgggggcacttttcaacaccctagccaaattcaggacttttaccacggaacgtcgtccctttcctcgcccccttaccagcagaatccctgcgctgtaacctgtcatggggaccccagcagcttctacggatacgaccctttgcaaaggcagagcctgttcagcagccaggattcggatctagtgcaatacaccgactgtaagctgacctcagccggcctgggggaagaagcagagagctcagagcagagtccttcacccacacagctctttccctggatgagaccacaagcagccgctggacgcaggagaggtagacagacctacagccgctaccaaaccctggagctggagaaagaattcctcttcaacccttaccttacccgcaagcggcggattgaggtgtctcacgctttgggacttacggagagacaggttaaaatttggttccagaacaggaggatgaaatggaaaaaggagaacaacaaagataagttccccagcagcaaatgtgagcaggaggaactggagaaacagaaaatggagagatcacaagacactgatgagcctctggatggacaaaagggcgagaagagcctggactgagaagcccccattgataaagccacttgtctccagctctcccctgctgtcgtccaatgttcctggaattaagatacggaagggggcacaatgttgctgtaaaagatgtagctgtaaatcgccccttctctgtaaactcatcctgtttgatacctaaatgaccggtgcccctaagaaccaggaaacctgctgtcttcctacctggtaggggaaggggggaggtggggggagaggaaatgactttctagtgtctgtgtataacgcaatagcttttgtggatcataacttgggggttttgtttttttttggtggggaaggtttgctctagaagtttttgtgtgcactatttctctatgtggtttattgtattttctttctataaaacaacagacaaaaaaacagaccaacaacatgaaactgcctaattcagctgtagtcccccctctctaacacattgctagatgccccctcttgttttgtccctggcaccccgcattctctgtgtgtgcgaggatgtagttagcatgcgcccagtgaaaagccacttgtgattttttagggttactgtgaacagactgtatactgta

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