2024-04-29 11:57:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_017837100 1397 bp mRNA linear VRT 11-AUG-2016 DEFINITION PREDICTED: Lepidothrix coronata homeobox B8 (HOXB8), transcript variant X1, mRNA. ACCESSION XM_017837100 VERSION XM_017837100.1 DBLINK BioProject: PRJNA338288 KEYWORDS RefSeq. SOURCE Lepidothrix coronata (blue-crowned manakin) ORGANISM Lepidothrix coronata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Lepidothrix. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_016690471.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Lepidothrix coronata Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1397 /organism="Lepidothrix coronata" /mol_type="mRNA" /isolate="B3197" /specimen_voucher="LSUMZ:110521" /db_xref="taxon:321398" /chromosome="Unknown" /sex="male" /dev_stage="adult" /country="Peru: Loreto Department, 1.5 km S Libertad, S. bank Rio Napo, 80 km N Iquitos" gene 1..1397 /gene="HOXB8" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:108508358" CDS 45..773 /gene="HOXB8" /codon_start=1 /product="homeobox protein Hox-B8 isoform X1" /protein_id="XP_017692589.1" /db_xref="GeneID:108508358" /translation="
MSSYFVNSLFSKYKTGDSLRPNYYDCGFAQDLGGRPTVVYGPSTGGTFQHPTQIQEFYHGASSLSSSPYQQNPCAVACHGDPGNFYGYDPLQRQSLFSAQESDLVQYTDCKLAASGLGEEAESSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKMERAQEVDEEGEAQKADKK"
misc_feature order(480..494,498..500,549..551,567..569,606..608, 612..617,624..629,633..641,645..650) /gene="HOXB8" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(486..488,495..497,615..617,624..629,636..638) /gene="HOXB8" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 489..647 /gene="HOXB8" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
cttccttcctcctccaaacccgaccgtctcttatttaaattaaaatgagctcttatttcgtcaactcactcttctccaagtacaaaaccggggactccctgcgccccaactactatgactgtgggttcgctcaggatctcgggggcagacccaccgtggtgtacggccccagcacggggggcaccttccagcaccccacccaaatccaggagttctaccacggagcgtcctcgctctccagctccccttaccaacagaatccctgcgccgtggcgtgccatggggaccccggcaacttctatggctacgaccccttgcaaaggcagagcctcttcagcgcccaggagtcggacttggtgcagtacacggactgcaagctcgcggccagcggcctcggggaggaggcggagagctccgagcaaagcccttctccgacccagcttttcccttggatgcgaccgcaagcagccgctggacggaggagggggaggcaaacctacagccgctaccagacgctggaactggagaaggaatttctatttaatccctacctgacccgcaaacggaggatcgaggtctcgcatgccctgggattgacagaaaggcaggtcaaaatctggttccagaacaggaggatgaaatggaaaaaggaaaacaacaaagacaagtttcccagcagcaaatgcgagcaggaagaactggaaaaacagaaaatggaaagagcccaggaggtggacgaggaaggggaagcacagaaggcggacaagaaataaaaggatttttaaggactgaaaggcaagcgctgctggggtggcagagcccccgagccccacgttaatggcagttaatgtaagggaggggtggggaaaaaaaaacaacaatgcatagaaaagagaaaggaaaaaaaaacccttttattgctgtaaaacaatatagctgtaagcaccactttcctgattatcctttgatacaatgaacagtatgcaaaagtgatcgggagctctctcctgccttttgccagttattaactagtggtagtgtaacgcaatagcttatgtaaaacatgactgtgaaatcttctctctctctctctctgtccttctctctgtctctctctcttctttcctggggggtgggttggttaacgtagctttcaatgctagaggagttacgtgaaattacgttcgtgcactttttttttttttttgaaatttgatttttcttttccttttccacctttttggttgtggtttatctgtatgtgccggaggtagctactgaaacaaacatcccaacaacatgaaactgcctatttatgctctagttatctctctctttctctctctcttcctctctttgctttccctgctgttcttttccttggttcggtctttttt
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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