LOCUS       XM_017799422            1355 bp    mRNA    linear   ROD 24-JUN-2019
DEFINITION  PREDICTED: Nannospalax galili homeobox B8 (Hoxb8), transcript
            variant X2, mRNA.
ACCESSION   XM_017799422
VERSION     XM_017799422.2
DBLINK      BioProject: PRJNA254049
KEYWORDS    RefSeq.
SOURCE      Nannospalax galili (Upper Galilee mountains blind mole rat)
  ORGANISM  Nannospalax galili
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Spalacidae; Spalacinae; Nannospalax.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_008342393.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 24, 2019 this sequence version replaced XM_017799422.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Nannospalax galili Annotation
                                           Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1355
                     /organism="Nannospalax galili"
                     /mol_type="mRNA"
                     /isolate="Female #2095"
                     /db_xref="taxon:1026970"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="brain"
                     /country="Israel: Animal Facility of the Institute of
                     Evolution, University of Haifa"
     gene            1..1355
                     /gene="Hoxb8"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 13 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:103738350"
     CDS             115..843
                     /gene="Hoxb8"
                     /codon_start=1
                     /product="homeobox protein Hox-B8 isoform X2"
                     /protein_id="XP_017654911.1"
                     /db_xref="GeneID:103738350"
                     /translation="

MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEAEAQKGDKK"

     misc_feature    order(550..564,568..570,619..621,637..639,676..678,
                     682..687,694..699,703..711,715..720)
                     /gene="Hoxb8"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(556..558,565..567,685..687,694..699,706..708)
                     /gene="Hoxb8"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    559..717
                     /gene="Hoxb8"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

ccgaaaactgtttatgaactggcatcccttcttcgaaatgtaaagcgaggacctctttaagtggcgcccccaactacagcctccgccgccgccgccgcctcaaaattcaataaaatgagctcttatttcgtcaactcactgttctccaaatacaaaaccggggagtccctgcgccccaattattatgactgcggcttcgcccaagacctgggcggccgacccaccgtggtgtacggtcccagcagcggcggcagcttccagcacccgtcgcaaatccaggagttctaccacgggccgtcgtcgctgtccacggctccctaccagcagaacccgtgcgccgtagcgtgccacggggaccccggcaacttctacggctatgacccgctgcagcgccagagcctgttcggtgcgcaggatccagacctggtgcagtacgcagactgcaagctcgccgccgccagcggcctgggcgaggaggccgagggctcggagcagagcccgtcgcccacacagctcttcccctggatgcgcccgcaagccgccggacgcaggcgaggccgacagacctacagccgctaccagaccctggagctggagaaggaattcctatttaatccctatctgactcgcaagaggaggatcgaggtatcgcacgcgctgggactgacagagagacaggtcaaaatctggttccagaaccggagaatgaagtggaaaaaagaaaacaacaaagacaagttccccagtagcaagtgcgagcaggaggagctggagaagcagaagctggagcgggcccccgaggcggccgacgaagccgaggcgcaaaagggtgacaaaaagtaggctccaactgggactgcccgagccggggccgcccgcacgtccgccggtccctcgaccacgccgccgcccgccccccgcctccgagagctccggccccgcgagcggagcctggagctgggcctcccaccgcagagtcccccgccgcgccagtccccgctagtggtagtatctcgtaatagcttctgtgtgtgagctaccgtggatctccttcccttctcccgggggccgggaaaaaaaggattttaagcaaggactccctcgccctgcgagggtgagtggctgcggcctgacagagcccccccctcgcccccgccccgtgtaaaaaaagcctccttgtgcaatggtcttttttccttaaacgtgcttctttgtaatgaccgaggtaccgatttctgctaagttttcccaacaacatgaaactgcctattcacgccgtaattctgtctccctcacctctctctctctctctctctctctctctctctctctctctctctcatcccccctctctc

//