2024-05-19 03:29:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_017780464 465 bp mRNA linear PLN 20-JAN-2023 DEFINITION PREDICTED: Gossypium arboreum plasma membrane ATPase 2-like (LOC108478025), mRNA. ACCESSION XM_017780464 VERSION XM_017780464.1 DBLINK BioProject: PRJNA907401 KEYWORDS RefSeq; includes ab initio. SOURCE Gossypium arboreum ORGANISM Gossypium arboreum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_069081) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_025698485.1-RS_2022_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..465 /organism="Gossypium arboreum" /mol_type="mRNA" /isolate="Shixiya-1" /db_xref="taxon:29729" /chromosome="12" /tissue_type="leaf" /genotype="A2" gene 1..465 /gene="LOC108478025" /note="plasma membrane ATPase 2-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108478025" CDS 1..465 /gene="LOC108478025" /codon_start=1 /product="plasma membrane ATPase 2-like" /protein_id="XP_017635953.1" /db_xref="GeneID:108478025" /translation="
MGVCGYNPFARSFKAFSAETIHLALNLGVDVKVITSDELASGKETGYRLSGSHEHKYEIVMRLQQMTYICGMTGDGVNDAPALKKAGIEIAVVDATDVARGASDIVLTEPGLSVIVSDVLTSRAIFQIMKNYTCCLHYYPNCLGIYVSCSYLEI"
misc_feature <49..>399 /gene="LOC108478025" /note="plasma-membrane proton-efflux P-type ATPase; Region: ATPase-IIIA_H; TIGR01647" /db_xref="CDD:273731" ORIGIN
atgggagtttgtgggtataatccctttgctcgatccttcaaggcttttagtgcggagacaattcatctggctctaaatcttggtgtcgatgtcaaggtgatcactagtgatgaactagccagtggcaaagaaactggttacaggctcagtggttcccatgagcacaaatatgagattgtaatgaggttacagcaaatgacttatatttgtggcatgactggagatggtgtgaatgatgcacctgcgcttaagaaggcaggcattgaaattgcagtggttgatgcaactgatgtagctcgtggtgcatcagatatagtgctaacagaaccagggcttagtgtcattgttagtgatgttctaacaagcagagccatttttcaaataatgaaaaactatacatgctgtctccattactatccaaattgtcttgggatttatgtttcttgctcttatttggaaatttga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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