2024-05-19 08:13:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_016871331 465 bp mRNA linear PLN 25-APR-2021 DEFINITION PREDICTED: Gossypium hirsutum plasma membrane ATPase 2-like (LOC107938239), mRNA. ACCESSION XM_016871331 VERSION XM_016871331.1 DBLINK BioProject: PRJNA713846 KEYWORDS RefSeq; includes ab initio. SOURCE Gossypium hirsutum (cotton) ORGANISM Gossypium hirsutum Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_053435.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gossypium hirsutum Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..465 /organism="Gossypium hirsutum" /mol_type="mRNA" /isolate="1008001.06" /db_xref="taxon:3635" /chromosome="A12" gene 1..465 /gene="LOC107938239" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:107938239" CDS 1..465 /gene="LOC107938239" /codon_start=1 /product="plasma membrane ATPase 2-like" /protein_id="XP_016726820.1" /db_xref="GeneID:107938239" /translation="
MGVCGYNPFARSFKAFSAETIHLALNLGVDVKVITSDELASGKETGYRLSGSHEHKYEIVMRLQQMTYICGMTGDGVNDAPALKKAGIEIAVVDGTDVARGASDIVLTEPGLSVIVSDVLTSRAIFQIMKNYTCCLHYYPNCLGIYVSCSYLEI"
misc_feature <49..>399 /gene="LOC107938239" /note="plasma-membrane proton-efflux P-type ATPase; Region: ATPase-IIIA_H; TIGR01647" /db_xref="CDD:273731" ORIGIN
atgggagtttgtgggtataatccctttgctcgatccttcaaggcttttagtgcggagacaattcatctggctctaaatcttggtgtcgatgtcaaggtgatcactagtgatgaactagccagtggcaaagaaactggttacaggctcagtggttcccatgagcacaaatatgagattgtaatgaggttacagcaaatgacttatatttgtggcatgactggagatggtgtgaatgatgcacctgcgcttaagaaggcaggcattgaaattgcagtggttgatggaactgatgtagctcgtggtgcatcagatatagtgctaacagaaccagggcttagtgtcattgttagtgatgttctaacaagcagagccatttttcaaataatgaaaaactatacatgttgtctccattactatccaaattgtcttgggatttatgtttcttgctcttatttggaaatttga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]