LOCUS       XM_016452382            1508 bp    mRNA    linear   VRT 03-MAY-2016
DEFINITION  PREDICTED: Sinocyclocheilus anshuiensis homeobox protein
            Hox-B8a-like (LOC107662386), transcript variant X2, mRNA.
ACCESSION   XM_016452382
VERSION     XM_016452382.1
DBLINK      BioProject: PRJNA319338
KEYWORDS    RefSeq.
SOURCE      Sinocyclocheilus anshuiensis
  ORGANISM  Sinocyclocheilus anshuiensis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Cyprinidae; Cyprininae; Sinocyclocheilus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_015551076.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Sinocyclocheilus anshuiensis
                                           Annotation Release 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Sinocyclocheilus anshuiensis"
                     /mol_type="mRNA"
                     /isolate="Anshui"
                     /db_xref="taxon:1608454"
                     /chromosome="Unknown"
                     /sex="female"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /country="China: Lingyun, Guangxi"
                     /collection_date="2012-08-20"
                     /note="cave-restricted"
     gene            1..1508
                     /gene="LOC107662386"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:107662386"
     CDS             154..891
                     /gene="LOC107662386"
                     /codon_start=1
                     /product="homeobox protein Hox-B8a-like isoform X2"
                     /protein_id="XP_016307868.1"
                     /db_xref="GeneID:107662386"
                     /translation="

MSSYFVNSLFTKYKSGDTLRPNYYECGFAQDLGTRPTVVYGPGTGATFQHAPQIQEFYHHGASTLSASPYQQSPCAVTCHGEPGNFYGYDALQRQTLFGAQDADLVQYSDCKLAAGGIGDETDNTEQSPSPTQLFPWMRPQAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKSEQEQIEKEKLEKEQASGTQPAGEDCDKAKQM"

     misc_feature    order(589..603,607..609,658..660,676..678,715..717,
                     721..726,733..738,742..750,754..759)
                     /gene="LOC107662386"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(595..597,604..606,724..726,733..738,745..747)
                     /gene="LOC107662386"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    598..756
                     /gene="LOC107662386"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

ccgttcagtttttggaaatcaaggtttggctgctgcattgtttgtgacctcagtaactgtgaaactgacaactctctgaagctactgcgctgatataaagacattcaaacgcaaactcttgaacaaaatcagcaccaacaacaacatcaaaagatgagctcatatttcgtcaactctctcttcactaaatacaaaagtggagacactctgcggccaaactattacgagtgcggatttgctcaggacctagggacgagacccaccgtcgtgtacggtccaggcaccggagccactttccagcatgcccctcagattcaagagttttaccaccacggcgcatccacgctctccgcatctccttaccagcagagtccctgtgcagtaacttgtcacggcgagccgggtaacttctacggttatgatgctctccagaggcaaacgcttttcggtgctcaagacgccgacttggttcagtatagcgactgcaagctcgccgcggggggcatcggcgacgagacggacaacacagagcagagtccgtcgcccacacagctgttcccgtggatgcgacctcaagctgccggacggaggcgaggacgccagacctacagccgatatcagacgctggaactcgagaaagagtttctcttcaatccctacctaacacgcaagcggcggattgaggtatcacacgctttgggactgacagaacgacaagtcaaaatctggtttcaaaaccgtcgcatgaaatggaaaaaagaaaacaacaaggacaagtttccaagcagcaagtctgaacaagagcagatcgaaaaagagaaactggagaaagaacaggcatccgggacacagccagctggcgaagactgcgacaaggcaaaacaaatgtaaagcggatgcgagtgtgtgtgtctgtgtgtgtgagagagagtgtgtgtgtgtttttgtgtacgtgtgtcagtcaatcaaaaaggcaaagaataaatagggaaaataaaacaggacaatggcgaagagaataacggtgtttgcatgggaggtttgtctcacagagacattttaatcaagtcgagtggttacatctttctttcgatgaaggaacagaaaaaaaatgactgggactagacgaatgactatacacttaatgtggtgaccacagaacttcaggaagacgaaggacaagaggcatttctactttttaactgttgttcagagagtatgatagtgttaaaactagtctcctttctttgtgaaataattatcgtgaaacttaagtttctattgttaggatattgtcattaacaattaccttggcagctgtatagtttttaagttaaatggtgcacttttaactgttctcacttatatgttatgatgatgacgtagacattaatgacttccaacaacatgaaactgcctatttatgccgtagaatctccttttacacgtctttggttcttcttaaatcgatggtatttttgttgtcttcctttcatggggtaagcatg

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