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2024-05-19 11:49:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_014704996             735 bp    mRNA    linear   PLN 18-NOV-2015
DEFINITION  Bipolaris victoriae FI3 hypothetical protein partial mRNA.
ACCESSION   XM_014704996
VERSION     XM_014704996.1
DBLINK      BioProject: PRJNA302306
            BioSample: SAMN02981453
KEYWORDS    RefSeq.
SOURCE      Bipolaris victoriae FI3
  ORGANISM  Bipolaris victoriae FI3
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae;
            Pleosporaceae; Bipolaris.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Condon,B.J., Leng,Y., Wu,D., Bushley,K.E., Ohm,R.A., Otillar,R.,
            Martin,J., Schackwitz,W., Grimwood,J., MohdZainudin,N., Xue,C.,
            Wang,R., Manning,V.A., Dhillon,B., Tu,Z.J., Steffenson,B.J.,
            Salamov,A., Sun,H., Lowry,S., LaButti,K., Han,J., Copeland,A.,
            Lindquist,E., Barry,K., Schmutz,J., Baker,S.E., Ciuffetti,L.M.,
            Grigoriev,I.V., Zhong,S. and Turgeon,B.G.
  TITLE     Comparative genome structure, secondary metabolite, and effector
            coding capacity across Cochliobolus pathogens
  JOURNAL   PLoS Genet. 9 (1), E1003233 (2013)
   PUBMED   23357949
REFERENCE   2  (bases 1 to 735)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (18-NOV-2015) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 735)
  AUTHORS   Ohm,R.A., Condon,B.J., Leng,Y., Wu,D., Bushley,K.E., Otillar,R.,
            Martin,J., Schackwitz,W., Grimwood,J., MohdZainudin,N., Xue,C.,
            Wang,R., Manning,V.A., Dhillon,B., Tu,Z.J., Steffenson,B.J.,
            Salamov,A., Sun,H., Lowry,S., LaButti,K., Han,J., Copeland,A.,
            Lindquist,E., Barry,K., Schmutz,J., Baker,S., Ciuffetti,L.M.,
            Grigoriev,I.V., Zhong,S., Nordberg,B.G., Cantor,M.N. and Hua,S.X.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (28-JAN-2014) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_014575381).
            
            ##Metadata-START##
            Organism Display Name :: Cochliobolus victoriae FI3
            GOLD Stamp ID         :: Gr00267
            ##Metadata-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Bipolaris victoriae FI3"
                     /mol_type="mRNA"
                     /strain="FI3"
                     /db_xref="taxon:930091"
                     /chromosome="Unknown"
     gene            <1..>735
                     /locus_tag="COCVIDRAFT_34417"
                     /db_xref="GeneID:26255451"
     CDS             1..735
                     /locus_tag="COCVIDRAFT_34417"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="XP_014560482.1"
                     /db_xref="GeneID:26255451"
                     /db_xref="InterPro:IPR001424"
                     /db_xref="InterPro:IPR006121"
                     /db_xref="JGIDB:Cocvi1_34417"
                     /translation="
MTVTAFETIFAVPMTCQSCINDIEGSLHQLSGINKVTANLKEQLVSVEGTAAPSAIVEAIQATGRDAVLRGSGKSDSAAVCILESHAPQVENKVRGLVRMVEVSPGMTIVDLSIRGLSPGTYHATVRESGNISEGPESTGGIWELGQSQKETKACRGIFGTVQVGKGGVGSVFLDKPMHIWEVIGRSIVVAKEQDGKFDKNDADTLVGVIARSAGVWDNDKTVCSCSGKTVWQEREEQRDRGML"
     misc_feature    22..699
                     /locus_tag="COCVIDRAFT_34417"
                     /note="copper, zinc superoxide dismutase; Region:
                     PLN02957"
                     /db_xref="CDD:215516"
ORIGIN      
atgacggtaacagcctttgaaacgatattcgcagtgcccatgacctgtcagtcgtgcatcaacgacatcgagggttccctacatcagttgagtggtatcaacaaagtgactgccaacctcaaggagcaattagtatctgtcgagggcacagcagcaccgtcggccattgtagaggcgattcaagctactgggcgtgatgctgttctccgggggtcgggcaaatcagacagtgcagcggtatgcattctagaatcacacgcaccacaggtggagaacaaggttcgcggcctggtgcgcatggtggaagtttctcctggtatgaccattgtggacttgagtataagagggctgtcacctggaacctatcatgccacagtacgtgagtcgggaaacatttccgagggacctgaatcgactggtgggatttgggaacttggtcagtcacaaaaagagaccaaggcttgtcgaggcatctttggaaccgttcaggttggaaagggtggagtgggatcggtgtttctcgacaagcccatgcacatctgggaagtgattgggcgcagcatcgtggttgcgaaagagcaggacggcaagtttgacaagaacgacgcagacacgctagttggggtcattgcacgcagtgcgggcgtatgggataacgacaagacggtgtgttcgtgttctggcaagacggtgtggcaggagcgcgaggagcagcgcgatcgcggtatgctctga
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]