2024-05-19 05:24:04, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_013831862 694 bp mRNA linear PLN 23-JUN-2022 DEFINITION PREDICTED: Brassica napus autophagy-related protein 8c (LOC106391255), transcript variant X3, mRNA. ACCESSION XM_013831862 VERSION XM_013831862.3 DBLINK BioProject: PRJNA844685 KEYWORDS RefSeq. SOURCE Brassica napus (rape) ORGANISM Brassica napus Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_063447) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 23, 2022 this sequence version replaced XM_013831862.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Brassica napus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..694 /organism="Brassica napus" /mol_type="mRNA" /cultivar="Da-Ae" /db_xref="taxon:3708" /chromosome="C4" /tissue_type="Seedling" /dev_stage="Seedling" /country="USA" gene 1..694 /gene="LOC106391255" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 long SRA reads, 25 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 155 samples with support for all annotated introns" /db_xref="GeneID:106391255" CDS 224..583 /gene="LOC106391255" /codon_start=1 /product="autophagy-related protein 8c isoform X2" /protein_id="XP_013687316.2" /db_xref="GeneID:106391255" /translation="
MADISFKSEHPLERRQIEASRIRDKYPDRVPVIVEKAERSDVPNIDKKKFLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPQTAAMMSAVSDENKDEDGFLYMTYSGENTFGLV"
misc_feature 257..565 /gene="LOC106391255" /note="ubiquitin-like (Ubl) domain found in Saccharomyces cerevisiae Atg8p and related proteins; sub-family of the autophagy-related 8 (ATG8) family; Region: Ubl_ATG8; cd16128" /db_xref="CDD:340545" misc_feature order(275..277,284..289,308..310,350..364,368..382, 389..391,398..406,410..415,422..433,440..442,536..538) /gene="LOC106391255" /note="Atg19 interaction site [polypeptide binding]; other site" /db_xref="CDD:340545" misc_feature order(275..277,287..289,308..310,314..322,362..364, 368..376,380..382,413..415,425..427,536..538) /gene="LOC106391255" /note="peptide binding site 2 [polypeptide binding]; other site" /db_xref="CDD:340545" misc_feature order(275..277,308..310,314..316,362..364,368..376, 380..382,404..406,413..415,425..427,536..538) /gene="LOC106391255" /note="peptide binding site 1 [polypeptide binding]; other site" /db_xref="CDD:340545" misc_feature order(308..310,335..340,362..364,371..373,398..403, 407..415,419..427,440..445,449..457,461..463,470..478, 482..490,560..565) /gene="LOC106391255" /note="Atg7 interaction site [polypeptide binding]; other site" /db_xref="CDD:340545" misc_feature order(332..334,407..409,419..421,440..457,461..463, 470..487,548..550,554..565) /gene="LOC106391255" /note="Atg4 interaction site [polypeptide binding]; other site" /db_xref="CDD:340545" misc_feature 425..427 /gene="LOC106391255" /note="key conserved lysine K33; other site" /db_xref="CDD:340545" polyA_site 694 /gene="LOC106391255" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ctttccgggttacccaatagaacaaatggcaaaactaaaaagtttccaatgacgacgtgtcgataactaaaaaagatcaaagtttcatcctttcagagtttatcagcttcgcgcagcgattacaaatattcttcaaaccctaattgagttgtcttcttctatttcgacaatctaaattggagaacgagaaaccctaatcttaggaattcgattctcaatcgccatggctgatatctctttcaagtcggaacacccgctggagaggagacagattgaagcttctcgcatcagggacaagtatccagacagagttccagtgattgtagagaaagctgagagaagtgatgttcccaatatcgacaagaaaaagttccttgtaccggctgatctaaccgtggggcaatttgtgtatgttgtccgtaaaagaatcaagctgagtgcagaaaaggcaatctttgtctttgtcaagaacacattgcctcaaactgctgcaatgatgtctgcagtctctgatgagaacaaagacgaagatgggtttctctacatgacttatagtggagagaacacttttggtttggtttaaaatctgtctacttttgaagtgttttcatgtacatatatgctatgctctttgaatatggagaatttttttatgttgctttggactgattatatgtaaattttgctttggatt
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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