LOCUS       XM_013831860             718 bp    mRNA    linear   PLN 23-JUN-2022
DEFINITION  PREDICTED: Brassica napus autophagy-related protein 8c
            (LOC106391255), transcript variant X1, mRNA.
ACCESSION   XM_013831860
VERSION     XM_013831860.3
DBLINK      BioProject: PRJNA844685
KEYWORDS    RefSeq.
SOURCE      Brassica napus (rape)
  ORGANISM  Brassica napus
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Brassiceae; Brassica.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_063447) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 23, 2022 this sequence version replaced XM_013831860.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Brassica napus Annotation Release
                                           102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Brassica napus"
                     /mol_type="mRNA"
                     /cultivar="Da-Ae"
                     /db_xref="taxon:3708"
                     /chromosome="C4"
                     /tissue_type="Seedling"
                     /dev_stage="Seedling"
                     /country="USA"
     gene            1..718
                     /gene="LOC106391255"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 124 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:106391255"
     CDS             224..607
                     /gene="LOC106391255"
                     /codon_start=1
                     /product="autophagy-related protein 8c isoform X1"
                     /protein_id="XP_013687314.2"
                     /db_xref="GeneID:106391255"
                     /translation="

MADISFKSEHPLERRQIEASRIRDKYPDRVPVIVEKAERSDVPNIDKKKSVVYFCLRFLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPQTAAMMSAVSDENKDEDGFLYMTYSGENTFGLV"

     misc_feature    257..589
                     /gene="LOC106391255"
                     /note="ubiquitin-like (Ubl) domain found in Saccharomyces
                     cerevisiae Atg8p and related proteins; sub-family of the
                     autophagy-related 8 (ATG8) family; Region: Ubl_ATG8;
                     cd16128"
                     /db_xref="CDD:340545"
     misc_feature    order(275..277,284..289,308..310,350..364,368..370,
                     395..406,413..415,422..430,434..439,446..457,464..466,
                     560..562)
                     /gene="LOC106391255"
                     /note="Atg19 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:340545"
     misc_feature    order(275..277,287..289,308..310,314..322,362..364,
                     368..370,395..400,404..406,437..439,449..451,560..562)
                     /gene="LOC106391255"
                     /note="peptide binding site 2 [polypeptide binding]; other
                     site"
                     /db_xref="CDD:340545"
     misc_feature    order(275..277,308..310,314..316,362..364,368..370,
                     395..400,404..406,428..430,437..439,449..451,560..562)
                     /gene="LOC106391255"
                     /note="peptide binding site 1 [polypeptide binding]; other
                     site"
                     /db_xref="CDD:340545"
     misc_feature    order(308..310,335..340,362..364,395..397,422..427,
                     431..439,443..451,464..469,473..481,485..487,494..502,
                     506..514,584..589)
                     /gene="LOC106391255"
                     /note="Atg7 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:340545"
     misc_feature    order(332..334,431..433,443..445,464..481,485..487,
                     494..511,572..574,578..589)
                     /gene="LOC106391255"
                     /note="Atg4 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:340545"
     polyA_site      718
                     /gene="LOC106391255"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ctttccgggttacccaatagaacaaatggcaaaactaaaaagtttccaatgacgacgtgtcgataactaaaaaagatcaaagtttcatcctttcagagtttatcagcttcgcgcagcgattacaaatattcttcaaaccctaattgagttgtcttcttctatttcgacaatctaaattggagaacgagaaaccctaatcttaggaattcgattctcaatcgccatggctgatatctctttcaagtcggaacacccgctggagaggagacagattgaagcttctcgcatcagggacaagtatccagacagagttccagtgattgtagagaaagctgagagaagtgatgttcccaatatcgacaagaaaaagtcagtagtatacttttgcttgaggttccttgtaccggctgatctaaccgtggggcaatttgtgtatgttgtccgtaaaagaatcaagctgagtgcagaaaaggcaatctttgtctttgtcaagaacacattgcctcaaactgctgcaatgatgtctgcagtctctgatgagaacaaagacgaagatgggtttctctacatgacttatagtggagagaacacttttggtttggtttaaaatctgtctacttttgaagtgttttcatgtacatatatgctatgctctttgaatatggagaatttttttatgttgctttggactgattatatgtaaattttgctttggatt

//