LOCUS       XM_013831859             756 bp    mRNA    linear   PLN 23-JUN-2022
DEFINITION  PREDICTED: Brassica napus autophagy-related protein 8c
            (LOC106391255), transcript variant X2, mRNA.
ACCESSION   XM_013831859
VERSION     XM_013831859.3
DBLINK      BioProject: PRJNA844685
KEYWORDS    RefSeq.
SOURCE      Brassica napus (rape)
  ORGANISM  Brassica napus
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Brassiceae; Brassica.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_063447) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 23, 2022 this sequence version replaced XM_013831859.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Brassica napus Annotation Release
                                           102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Brassica napus"
                     /mol_type="mRNA"
                     /cultivar="Da-Ae"
                     /db_xref="taxon:3708"
                     /chromosome="C4"
                     /tissue_type="Seedling"
                     /dev_stage="Seedling"
                     /country="USA"
     gene            1..756
                     /gene="LOC106391255"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 134 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:106391255"
     CDS             262..645
                     /gene="LOC106391255"
                     /codon_start=1
                     /product="autophagy-related protein 8c isoform X1"
                     /protein_id="XP_013687313.2"
                     /db_xref="GeneID:106391255"
                     /translation="

MADISFKSEHPLERRQIEASRIRDKYPDRVPVIVEKAERSDVPNIDKKKSVVYFCLRFLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPQTAAMMSAVSDENKDEDGFLYMTYSGENTFGLV"

     misc_feature    295..627
                     /gene="LOC106391255"
                     /note="ubiquitin-like (Ubl) domain found in Saccharomyces
                     cerevisiae Atg8p and related proteins; sub-family of the
                     autophagy-related 8 (ATG8) family; Region: Ubl_ATG8;
                     cd16128"
                     /db_xref="CDD:340545"
     misc_feature    order(313..315,322..327,346..348,388..402,406..408,
                     433..444,451..453,460..468,472..477,484..495,502..504,
                     598..600)
                     /gene="LOC106391255"
                     /note="Atg19 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:340545"
     misc_feature    order(313..315,325..327,346..348,352..360,400..402,
                     406..408,433..438,442..444,475..477,487..489,598..600)
                     /gene="LOC106391255"
                     /note="peptide binding site 2 [polypeptide binding]; other
                     site"
                     /db_xref="CDD:340545"
     misc_feature    order(313..315,346..348,352..354,400..402,406..408,
                     433..438,442..444,466..468,475..477,487..489,598..600)
                     /gene="LOC106391255"
                     /note="peptide binding site 1 [polypeptide binding]; other
                     site"
                     /db_xref="CDD:340545"
     misc_feature    order(346..348,373..378,400..402,433..435,460..465,
                     469..477,481..489,502..507,511..519,523..525,532..540,
                     544..552,622..627)
                     /gene="LOC106391255"
                     /note="Atg7 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:340545"
     misc_feature    order(370..372,469..471,481..483,502..519,523..525,
                     532..549,610..612,616..627)
                     /gene="LOC106391255"
                     /note="Atg4 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:340545"
     polyA_site      756
                     /gene="LOC106391255"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

tcccggtacacctttccgggttacccaatagaacaaatggcaaaactaaaaagtttccaatgacgacgtgtcgataactaaaaaagatcaaagtttcatcctttcagagtttatcagcttcgcgcagcgattacaaatattcttcaaaccctaattgagttgtcttcttctatttcgacaatctaaattggagaacgagaaaccctaatcttagatttcaattggtgttgattgatttcaggaattcgattctcaatcgccatggctgatatctctttcaagtcggaacacccgctggagaggagacagattgaagcttctcgcatcagggacaagtatccagacagagttccagtgattgtagagaaagctgagagaagtgatgttcccaatatcgacaagaaaaagtcagtagtatacttttgcttgaggttccttgtaccggctgatctaaccgtggggcaatttgtgtatgttgtccgtaaaagaatcaagctgagtgcagaaaaggcaatctttgtctttgtcaagaacacattgcctcaaactgctgcaatgatgtctgcagtctctgatgagaacaaagacgaagatgggtttctctacatgacttatagtggagagaacacttttggtttggtttaaaatctgtctacttttgaagtgttttcatgtacatatatgctatgctctttgaatatggagaatttttttatgttgctttggactgattatatgtaaattttgctttggatt

//