2024-05-19 06:53:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_012348106 294 bp mRNA linear PLN 22-APR-2015 DEFINITION Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA. ACCESSION XM_012348106 VERSION XM_012348106.1 DBLINK BioProject: PRJNA280969 BioSample: SAMN02981252 KEYWORDS RefSeq. SOURCE Saprolegnia parasitica CBS 223.65 ORGANISM Saprolegnia parasitica CBS 223.65 Eukaryota; Sar; Stramenopiles; Oomycota; Saprolegniales; Saprolegniaceae; Saprolegnia. REFERENCE 1 (bases 1 to 294) AUTHORS Jiang,R.H., de Bruijn,I., Haas,B.J., Belmonte,R., Lobach,L., Christie,J., van den Ackerveken,G., Bottin,A., Bulone,V., Diaz-Moreno,S.M., Dumas,B., Fan,L., Gaulin,E., Govers,F., Grenville-Briggs,L.J., Horner,N.R., Levin,J.Z., Mammella,M., Meijer,H.J., Morris,P., Nusbaum,C., Oome,S., Phillips,A.J., van Rooyen,D., Rzeszutek,E., Saraiva,M., Secombes,C.J., Seidl,M.F., Snel,B., Stassen,J.H., Sykes,S., Tripathy,S., van den Berg,H., Vega-Arreguin,J.C., Wawra,S., Young,S.K., Zeng,Q., Dieguez-Uribeondo,J., Russ,C., Tyler,B.M. and van West,P. TITLE Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica JOURNAL PLoS Genet. 9 (6), E1003272 (2013) PUBMED 23785293 REFERENCE 2 (bases 1 to 294) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (22-APR-2015) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 294) AUTHORS Russ,C., Nusbaum,C., Tyler,B., van West,P., Dieguez-Uribeondo,J., de Bruijn,I., Young,S.K., Zeng,Q., Gargeya,S., Alvarado,L., Berlin,A., Chapman,S.B., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Howarth,C., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yandava,C., Haas,B. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform TITLE Direct Submission JOURNAL Submitted (14-FEB-2011) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_012156435). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..294 /organism="Saprolegnia parasitica CBS 223.65" /mol_type="mRNA" /strain="CBS 223.65" /db_xref="taxon:695850" /chromosome="Unknown" gene <1..>294 /locus_tag="SPRG_08985" /db_xref="GeneID:24131184" CDS <1..294 /locus_tag="SPRG_08985" /codon_start=1 /product="hypothetical protein" /protein_id="XP_012203496.1" /db_xref="GeneID:24131184" /translation="
KAQRVTTLQDSASIVYIGDGVNDLLALLAADVGIVFGSPNASASRVARHFGVRLVDLADEKALSVAALAAHAATAKAENAPLLFRAPSWHILGLFLR"
misc_feature <1..114 /locus_tag="SPRG_08985" /note="Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl21460" /db_xref="CDD:451251" ORIGIN
aaggcgcaacgcgtgaccacgctgcaagacagcgcgagcatcgtctacattggcgacggcgtcaacgacctcctcgcactgctcgcagccgacgtcggcatcgtctttggcagcccgaatgcgtcggcgtcccgtgtcgcgcggcattttggcgtgcgccttgtcgatctcgcagacgaaaaagctttgtctgtcgcggcgttggcggcccatgcggcgacagccaaggcagaaaacgcacccttgctcttccgcgcaccgtcgtggcacattcttggcctgtttctgcgctaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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