2024-05-19 09:19:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_009867870 1878 bp mRNA linear VRT 24-OCT-2014 DEFINITION PREDICTED: Apaloderma vittatum copper-transporting ATPase 2-like (LOC104269173), partial mRNA. ACCESSION XM_009867870 VERSION XM_009867870.1 DBLINK BioProject: PRJNA263608 KEYWORDS RefSeq. SOURCE Apaloderma vittatum (bar-tailed trogon) ORGANISM Apaloderma vittatum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Trogoniformes; Trogonidae; Apaloderma. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_009692635.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Apaloderma vittatum Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on the 3' end. FEATURES Location/Qualifiers source 1..1878 /organism="Apaloderma vittatum" /mol_type="mRNA" /isolate="BGI_N311" /db_xref="taxon:57397" /chromosome="Unknown" /sex="male" /country="Tanzania" gene 1..>1878 /gene="LOC104269173" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins" /db_xref="GeneID:104269173" CDS 1..>1878 /gene="LOC104269173" /codon_start=1 /product="copper-transporting ATPase 2-like" /protein_id="XP_009866172.1" /db_xref="GeneID:104269173" /translation="
MERKLDNKMKRELSCLATLNNKNITLVSIHKQQAAHDVPELLIIGEKSKMGSPVKTSSNLQKEEKLLQSYSMGMKEVNTVERQALSNTDSPPDCKLEPTMKHSFAFDNLGYEESFEAVPSPSSQEHTVAVNVMGMTCQSCVQSIEGRISKVNGIVSIKVSLEQNNAVIKYLQSEISPEQICQEIQDMGFDANIAEERLTTATVNLSCLREAVVKLRVEGMTCQSCAINIEGKIRKLHGVAKIKVSLGNQEAIIAYYPYLIQPDDLKSHISNLGYGCTIKSKSAPLKLGVLDVERLQNANPKETPASLEGDGVDLLVAKMSNTAAVAVRIEGMHCKSCVKNIEGNISDLPGIQSIRVSLEHKRAVVQYSPDLITLSALQQAIESLPPGNFKVCLPNGSEANRGASPSPALLCDPVREPLQDTCTAVIRIDGMTCNSCVQSVEGTILQRQGVQHVAVSLASGTGTICYDPAVTNGEELRAAIEDMGFDASVLTDAAAAGGCRYQPDASDVAVQPRAPEPPRQGCALDPHPDSPRLDRPNQPSGEPAEKCFLQITGMTCASCVSTIERNLQKEDGIVSVLVALMAGKAEIKYKPEFIQPLEIAQLIQNLGFEATVIEDHAETEGNVELL"
misc_feature 388..573 /gene="LOC104269173" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(403..411,418..420) /gene="LOC104269173" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 640..831 /gene="LOC104269173" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(658..666,673..675) /gene="LOC104269173" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 979..1152 /gene="LOC104269173" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(994..1002,1009..1011) /gene="LOC104269173" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1273..1464 /gene="LOC104269173" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1291..1299,1306..1308) /gene="LOC104269173" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" misc_feature 1645..1833 /gene="LOC104269173" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1660..1668,1675..1677) /gene="LOC104269173" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" ORIGIN
atggagagaaagctggacaataaaatgaaaagggaactgtcctgcttagctactttaaacaacaaaaacataaccctggtgtctattcataagcagcaggcagctcatgatgtgcctgaactactgattattggtgaaaagtccaagatgggatctccggtaaaaacaagcagtaacttgcagaaagaagagaagcttttgcagagttactccatgggaatgaaagaagtcaatacagttgaaagacaggctttgtctaacactgattctccacctgactgcaagctggagcctacaatgaaacacagttttgcttttgacaacctgggctatgaagagagctttgaagctgtgccctctccatcttcccaggaacacactgtggcagttaatgtcatgggaatgacttgccagtcatgtgtgcagtcgatagaaggccgaatttctaaggtgaacggcatcgtgagtattaaagtctcccttgaacagaacaatgctgtaataaagtacctgcagtctgaaataagtcctgaacagatttgccaggaaattcaggatatgggctttgatgccaacatagcagaagagaggttgacaacagcgaccgtaaatctgtcgtgcttgagagaagcagtagttaagcttcgtgtggaaggcatgacgtgccaatcctgtgccatcaacattgaaggaaagattaggaaactgcatggtgtggcaaaaatcaaggtgtcgcttggtaaccaggaagcaattattgcgtattatccttacctcattcagcctgacgacctcaagagccatatcagtaacctgggctatggctgcaccattaaaagtaaatcagccccattgaagttgggtgtcctcgacgtcgagcgcttgcaaaatgcaaaccccaaggagacaccagcgagtctcgagggtgatggcgtagatctgctggtcgccaagatgagtaacacagctgcggtggctgtacggatagaaggcatgcactgcaagtcctgtgtcaaaaacattgaaggaaatatatcagatcttcctggcatacaaagtattagagtgtctttggagcataagcgtgctgtggtacagtatagcccagatttaattaccctgtcagctttgcagcaagctattgaatcccttccacctggaaactttaaagtatgcctccctaatggttcagaagcaaatagaggagcatctccatcacctgctttgctgtgcgatcccgtcagagagccgctgcaggacacatgcacagctgttattaggattgatggcatgacctgcaattcttgtgtacagtccgtcgaagggaccatattgcagagacaaggagtgcaacacgtagcagtttctttagctagtggaactggaaccatatgttatgatccagctgttactaatggagaagagttaagagctgctatagaagacatggggtttgatgcttctgtgctgacagatgccgccgctgctggaggatgtaggtaccagcctgatgccagcgacgttgccgtgcagcctcgagctccagagcctcctcgccaaggctgtgccttggatcctcatccagacagtcctcgccttgacaggccaaaccagcccagcggagagccagctgaaaagtgtttcttacaaatcacaggcatgacctgtgcctcatgtgtgtctaccattgagagaaatttgcagaaagaagacggaattgtttcagtgttggtagcactgatggcgggtaaagccgagataaaatacaagccagaattcatacagcctcttgaaattgcacagctgatccagaatttgggttttgaagctacggtcatagaagatcatgcagaaacagaaggaaatgtggagcttctt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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