2024-05-19 16:06:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_009287270 2154 bp mRNA linear VRT 05-DEC-2016 DEFINITION PREDICTED: Aptenodytes forsteri ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), mRNA. ACCESSION XM_009287270 VERSION XM_009287270.1 DBLINK BioProject: PRJNA261081 KEYWORDS RefSeq. SOURCE Aptenodytes forsteri (emperor penguin) ORGANISM Aptenodytes forsteri Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Sphenisciformes; Spheniscidae; Aptenodytes. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_008796165.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Aptenodytes forsteri Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2154 /organism="Aptenodytes forsteri" /mol_type="mRNA" /isolate="BGI_AS27" /db_xref="taxon:9233" /chromosome="Unknown" /sex="male" /country="Antarctica" gene 1..2154 /gene="ST6GALNAC5" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 9 Proteins" /db_xref="GeneID:103905560" CDS 90..830 /gene="ST6GALNAC5" /codon_start=1 /product="alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5" /protein_id="XP_009285545.1" /db_xref="GeneID:103905560" /translation="
MHCKSCALVTSSGHLLGSKQGDRIDETECVIRMNDAPTRGYGKDVGNKTSLRVIAHSSIQRILRNRNELLNMSHGAVFIFWGPSSYMRRDGKGLVYNNLQLMNQILPQLKAYMISRHKMLQFDDLFKRETGKDRKISNTWLSTGWFTMTIALELCDRINVYGMVPPDFCRDPNHLSVPYHYYEPLGPDECTMYISHERGRKGSHHRFITEKRVFENWARTFNIHFFQPDWKPEPLTVNHPEIKPVV"
misc_feature 93..638 /gene="ST6GALNAC5" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:425864" ORIGIN
cgggacgcggccagcaccgcccggcgctccccgtcggggccggcctcctggagggctacatcagcgtcctggagcacaagcctttaaaaatgcactgcaagagctgtgcgttggtaaccagctctggacaccttctgggaagtaaacaaggtgacagaatcgacgagacagagtgcgtaatacgaatgaatgatgcacctactcgaggttatggaaaagatgttggaaacaaaacgagccttcgagtcattgcacactccagtattcagaggattttgcgaaatcgcaacgaactcttaaatatgagccacggtgctgtgtttatcttctggggtcctagcagctacatgaggagagatggtaaaggcttggtgtataataacctgcagctgatgaatcagatactgcctcaattaaaagcatatatgatttctcgccacaagatgcttcaatttgatgacctttttaaacgggaaactgggaaagacaggaagatatccaacacttggcttagcacgggctggttcacaatgactatcgcattagagctctgtgacaggataaatgtttatggcatggtgccaccggatttctgcagggatcctaatcatctttcagtaccttatcattattatgaacctttgggacctgatgaatgcacaatgtacatttcacacgagcggggacgaaagggcagtcaccatcgtttcatcacagagaaacgagtgtttgagaactgggcacggacattcaatattcactttttccaaccagactggaaaccagaaccgctcactgtaaatcaccctgagattaaaccggtggtctgagggatgaacacacaagaccgcaatcacagtcacccactgcgtcagccttcggggtgttggaccttctgggacagcaaggcaacctagaggagaagggcaacaggatttgcagctgataactgcaacaacagtcaggaagttacgatgaaggagcagagcgtatcgaaagtactttctgtcgaactgtgtattaatcagtatatagcctcttctggccatctgacttcctgtatgtgtatgtgatttgtgaaaaacaacttgagtatcattaacgggatggttaattcattatggttttttaaagtacaatgccactgaattttcatagtgaaaacttacggtatttatttaatggaggtttttatgcaacctaggctagtatttttctaattcacagttatgtggttgtttatctttcataatctttcaaatcaaaaattaatattgctgatggtttgaaaggcctagctttttatttttaaaacttgttggaaaatatgattctgtatagcatgtaattaatatttgagctggaaacgttgcatttcttttaaaaattttgggctccgttccagcctgaagcctttaacagcaagaacggtcccatgtgcagatctagctaactttacattctgacatctcatgttaatatgaaaaaggtagtgaaaattctgtttgatattaatgtgcatttgccgctgttctatcaagctgctgttttttcattcggggtgggagaaaggagggcgaagtttatccaaaaaaatcaccgtctatagcagcatgctttcaatgaagaagagaccagctaaggctggaagggctgtgttctgttttgcctcttgtagtcctgcaagaggctgaaggagcaacccctcctgaggcaacagaccacagaccaggcaacaacagcttgaaacaacatgaccaaatttctgaaatcaagaagttacactaccgggtactacaacaccagccatactagccagaaagattacagcactgcgcctgcacaaatctctgccttccactgttccaagatcatggctgatctcggagatcctggatcccactgaagccgggatgtgaaaagagctccacgagtacaaaattgtccccttgaaaagagcagagttacacttggcagtttttttgtgaagtacacgtgcatggtgagtccctgcaaaccaaggggccggacaatgctagcgctgtatatggaacctcacagtgtgaattactgggttacatttggcttgtgaataaagaagatttcagttacagtattatttttccttttgcctcacaaatattaaatctctaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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