2024-05-19 10:32:45, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_009185580 1118 bp mRNA linear PRI 20-NOV-2019 DEFINITION PREDICTED: Papio anubis copper chaperone for superoxide dismutase (CCS), transcript variant X2, mRNA. ACCESSION XM_009185580 VERSION XM_009185580.4 DBLINK BioProject: PRJNA576697 KEYWORDS RefSeq. SOURCE Papio anubis (olive baboon) ORGANISM Papio anubis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044987.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Nov 20, 2019 this sequence version replaced XM_009185580.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Papio anubis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1118 /organism="Papio anubis" /mol_type="mRNA" /isolate="15944" /db_xref="taxon:9555" /chromosome="12" /sex="male" /tissue_type="whole blood" gene 1..1118 /gene="CCS" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 128 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns" /db_xref="GeneID:101024502" CDS 189..956 /gene="CCS" /codon_start=1 /product="copper chaperone for superoxide dismutase isoform X2" /protein_id="XP_009183844.1" /db_xref="GeneID:101024502" /translation="
MTCQSCVDAVRKSLQGVAGVQDVEVHLENQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSDQLHNLGAAVAILGGPGTVQGVVRFLQLSPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGDHFNPDGASHGGPQDSDRHRGDLGNVHADADGCAIFRMEDEKLKVWDVIGRSLVIDEGEDDLGRGGHPLSKITGNSGQRLACGIIARSAGLFQNPKQICSCDGLTIWEERGRPIAGKGRKESAQPPAHL"
misc_feature 189..890 /gene="CCS" /note="copper, zinc superoxide dismutase; Region: PLN02957" /db_xref="CDD:215516" ORIGIN
ttaagggtgtctttcgagggtcagtccccgcgacgccgcgctgagtggtgctcctgcgcctgaagagttctgcgtttcgggctggtgactgggtccagaatggcttcggactcggggaaccaggggaccctctgcacgcgatcatcggtcggtccctgctgcccttgcagttggagttcgcggtgcagatgacctgtcagagctgtgtggacgcggtgcgcaagtccctgcaaggggtggcaggtgtccaggatgtggaggtgcacttggagaatcagatggtcttggtacacaccactctgcccagccaggaggtgcaggctctcctggaaggcacggggcggcaggcagtactcaagggcatgggcagcgaccagttgcataatctgggggcagcagtggccatcctgggagggcctggcaccgtgcagggggtggtgcgcttcctacagctgagccctgagcggtgcctcatcgagggaactattgacggcctggagcctgggctgcatggactccatgtccatcagtacggggacctcacaaacaactgcaacagctgtggggaccactttaaccctgatggagcatctcatgggggcccccaggactctgaccggcaccgcggagacctgggcaatgtccatgctgatgctgacggctgcgccatcttcagaatggaggatgagaagctgaaggtgtgggatgtgattggccgcagcctggttattgatgagggagaagatgacctaggccggggaggccatcccttatccaagatcacagggaactctgggcagaggttggcctgcggcatcattgcacgctctgctggcctcttccagaaccccaagcagatctgctcttgcgatggcctcaccatctgggaggagcgaggccggcccatcgctggcaagggccgaaaggagtcagcccagccccctgcccacctttgagcaggacctcaccttggctctgttgctgtcctccagggcgagcactttcctcttccagagggggccagagggaccttgcctgcccagtctttggagagctcagtacagggcaggagctgctgcggtgttcccttggcaaatgagttttattttcatttggga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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