2024-05-19 15:14:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008942520 1435 bp mRNA linear VRT 02-SEP-2014 DEFINITION PREDICTED: Merops nubicus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), mRNA. ACCESSION XM_008942520 VERSION XM_008942520.1 DBLINK BioProject: PRJNA253837 KEYWORDS RefSeq; includes ab initio. SOURCE Merops nubicus (carmine bee-eater) ORGANISM Merops nubicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Coraciiformes; Meropidae; Merops. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_008615469.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Merops nubicus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1435 /organism="Merops nubicus" /mol_type="mRNA" /isolate="BGI_N331" /db_xref="taxon:57421" /chromosome="Unknown" /sex="female" gene 1..1435 /gene="ST6GALNAC5" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 10 Proteins" /db_xref="GeneID:103775076" CDS 1..789 /gene="ST6GALNAC5" /codon_start=1 /product="alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5" /protein_id="XP_008940768.1" /db_xref="GeneID:103775076" /translation="
MSTANFEVCMSLQPLKMHCKSCALVTSSGHLLGSKQGDRIDETECVIRMNDAPTRGYGKDVGNKTSLRVIAHSSIQRILRNRNELLNMSHGAVFIFWGPSSYMRRDGKGLVYNNLQLMNQILPQLKAYMISRHKMLQFDDLFKRETGKDRKISNTWLSTGWFTMTIALELCDRINVYGMVPPDFCRDPNHLSVPYHYYEPLGPDECTMYISHERGRKGSHHRFITEKRVFENWARTFNIHFFQPDWKPEPLPVNRPEIKPLV"
misc_feature 31..597 /gene="ST6GALNAC5" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:425864" ORIGIN
atgtctacagctaattttgaagtatgtatgtctttgcagcctttaaaaatgcactgcaagagttgtgcgctggtgaccagctctggacaccttctgggaagtaaacaaggtgacagaatcgacgagacagagtgcgtaatacgaatgaacgatgcgcccactcgaggttatggaaaagatgttggaaacaaaacgagccttcgcgtcattgcacactccagtattcagaggattttgcgaaatcgcaacgagctcttaaatatgagccacggtgccgtgtttatcttctggggtcctagcagctacatgaggagagatggaaaaggcttggtgtataataacctccagctgatgaatcagatactgcctcaattaaaagcatatatgatttctcgccacaagatgctccaatttgatgacctttttaaacgggaaactgggaaagacaggaagatatccaacacttggcttagcactggctggttcacaatgactatcgcattagagctctgtgacaggataaatgtttatggcatggtgccaccggatttctgcagggatcctaatcatctttcagtaccttatcattattacgaacctctgggacctgacgagtgcacaatgtacatctcccacgagcggggacggaagggcagccaccatcgcttcatcacagagaaacgagtctttgagaactgggcacggacattcaacatccacttcttccaaccagactggaaaccagaacccctccccgtaaatcgtccggagattaaacccctggtctgagggttgaatgcacaagacggcaatcgcagtcacctactgtgccagcctctgggctgtgggaccttctggggcagcaaggcaaccgagaggagaaggatgacaggatctgcagctgggagctgcagcggcagtcgggaagttacgatgaaggagcagagcgttatcaagagtactttctgttgaactgtgtgttaatcctgtacttagcctttcttggccatctgacttcctccatgtgtatgtggtttgtgaaaaacaacttgagtatcgttaacggatggttaattcattatggtttttttaaactacaatgccactgaattttcatagtgaaaacttacagtatttatttaaatggaggtttttatgcaacctaggccagtatttttctaattcatagttatgtggttatctttcataatctttcaaatccaaaattaatactgctgatggttcgaaaggcctagctttttatttataaaatttgtttgaaaaatatgattctctacagcatgtaattaatatttgatctggaaatgttgcatttcttttaaaaatttggggctccattttagcctaaagcctttaacagcaagaatggtcccatgtgcagatctagctaactttacattctgagatctcatgt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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