2024-05-19 15:40:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008925959 3438 bp mRNA linear VRT 29-JUL-2019 DEFINITION PREDICTED: Manacus vitellinus ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), mRNA. ACCESSION XM_008925959 VERSION XM_008925959.4 DBLINK BioProject: PRJNA341382 KEYWORDS RefSeq; includes ab initio. SOURCE Manacus vitellinus (golden-collared manakin) ORGANISM Manacus vitellinus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Manacus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_021940737.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Jul 19, 2019 this sequence version replaced XM_008925959.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Manacus vitellinus Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..3438 /organism="Manacus vitellinus" /mol_type="mRNA" /isolate="BGI_N305" /db_xref="taxon:328815" /chromosome="Unknown" /sex="female" /country="Panama" gene 1..3438 /gene="ST6GALNAC5" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 15 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:103759556" CDS 1..789 /gene="ST6GALNAC5" /codon_start=1 /product="alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5" /protein_id="XP_008924207.3" /db_xref="GeneID:103759556" /translation="
MPTANPELRVSLQPLKMHCKSCALVTSSGHLLGGKQGDRIDEAECVIRMNDAPTRGYGRDVGNKTSLRVIAHSSIQRILRNRHELLNMSHGAVFIFWGPSSYMRRDGKGLVYNNLQLMNQILPRLKVYMISRHKMLQFDDLFKRETGKDRKISNTWLSTGWFTMTIALELCDRINVYGMVPPDFCRDPNHLSVPYHYYEPLGPDECTMYLSHERGRKGSHHRFITEKRVFENWARTFNIHFFQPDWKPEPRTVTRPETKPLL"
misc_feature 31..597 /gene="ST6GALNAC5" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:425864" ORIGIN
atgcctacagctaatcctgagctccgtgtgtctctgcagccgttaaagatgcactgcaagagctgtgccttggtgaccagctccgggcacctcctgggcggcaaacagggcgacaggatcgacgaggccgagtgcgtgatccggatgaacgacgcgcccacccggggctacggaagagacgtcgggaacaaaacgagcctgcgggtcatcgcccactccagcatccagaggatcctgcggaaccgccacgaactcttgaacatgagccacggcgctgtgttcatcttctgggggccgagcagctacatgcgcagggacggcaagggcctggtgtacaacaacctgcagctgatgaaccagatactgccacggttaaaagtgtacatgatttctcgccacaagatgctccagtttgatgacctgttcaaacgggaaaccgggaaggacaggaagatatccaacacttggcttagcacgggctggttcacaatgactatcgcattagagctctgtgacaggataaatgtttatggcatggtgccaccggatttctgcagggatcctaaccatctttcagtaccttatcattactatgaacctctgggacctgacgagtgcacaatgtacctttcccacgagcggggccgcaaggggagccaccaccggttcatcacagagaaacgagtcttcgagaactgggcgcggacattcaacatccacttcttccagccagactggaaaccagagccacgcactgtgacccgccccgagaccaaaccgctgctctgagggggggacacacgaggccacagtcacagtcaccttctgtaccagcctttggacctcctgggacagcactgcaacccggaggggaaggggaacagggtctgcagctgggaactgcagcagcagtcaggaagctgtgatggaggagcagcacataccaagagtactttctgttgaactgtcgcctttttgggccacctgactccctgtgtgtgtacgtgatttgtgaacaacaactcgggtgtcgttaacggatggttaattcattacggcttttttaagtacaacgccactggattttcatagtgaaaacttacagtatttatttaatggaggtttttatgcaacctaggccagtatttttctaattcacagttatgtggttgtttatctttcataatctttcaaatgcaaagttaatattgctgatggtttgaaaggcctagccttttatttataaaattcgtttgaaatatataattctatatagcatgtaattaatatttgatcaggaaatgttgcatttcttctaaaaaatttgggctctgttccagcctaaagcctttaatggcaagagtggtcccatgtgcagatccagctcactttacattctgacatctcatgttaatatgaaaacggtagtgaaaattctgtttgatattaatgtgcatttgctgctgtgctatcaagctgctgttttttaaataggggtgggaggaaggagggcaaacaaaatttatcaaaaaaacccaaaaccccactggctatggcagcgtgcttctcagtgaagacaccaggctgaggctggaggggttgtgttctgtcatttgtactcttgcaagaggctgacagggaccctcctgaggcaacagactacaaaccaggccacaactgctggaaacaacacgaccaaatttctggaatgaagaagttaaactgctaggtactacaatagcatccatacttgccagaaagatcacaacactgcacctgcaaaaatctctgccttacgcagttccaagatcatcactgagctcagagattgtggatcacgttgaagctgggctgtgaaaagagttccccaagtacagagttgtcctcttgaaaagagcaaagttaaactttgcatttttttccatgaagtacctgtatgtgcatggcaagtccctgcgagccaaggggaaggacaacgctcgtgctgtgtaaggaacctcccagtgggaattactgggttacatttggcttgagaataaagaagatttcagttacagtgttatttttgcttttgcttcacaagcctcaaacctctgatttcttcgaagtaatgagtaactattgcatgaaacgtacctcaggtgatggaaggtgtctctcattagacaaatgtgaaagccagaacaaagatactacctttaaacatccaaatccaagaagctgaacctcagaggtgatgcgtagaactgggaccaaactcactatcatttaaacccccttttaacccatggtcttcctctttccaaaactgaatagcaatagctgcagctgcctgacagataccctgatcctctgggaacaaagtgaactgccctgtcaggggcaaaacagtgttacccctgtaacactgtctggacctgaagtgcaggcctccaagagccactgtcctgctgcagccctccccagtatcaaaaagtaagaaactataacctattttgccttaaaagctttatttgggtgttcttcctggtgcacaccgctcagcatacaaacaatgccaattgcttgtaacctgtctctcctcagctggtgttcagctctccctctttcactgatggtgttttattccttccacttgacttcactgcgttctacagaaaccagaatggattctgaactcgtggtaatttgaacatccctttcaacatgtgtactggggcatgtatccagcagatgttgctccaattgatgaaatctgtcaaattgatttacagatcatttctaatgtgactgcaagagatggtacagatcatggtaagtcctctgatgccaccatccttgttttattagtgatataataataaaaagatcctgtcattctaaactagagctcttagtttttccattaattgagggctgcaggatgtgtatgctgtatgtttagttatattattgttaaaaacagatcatttaaagatggattacactggtctacttctagtattcagtagaaacatggggacttgccagactccactgtgttccacacgcttgtttcctgtctgcaagactggtcagcgtcaaacagatcaggtgaagcattaagaatataaaaaacatgggataaactgtcactacatctcctgacttttaagagagcgaagctaaggattgtaacttattccttgttcagcttctgttaataactgtgttcttcctacccccatacacagccagtcttttaaaccaaacaaacccaaactcactttagtctcatcagcctcctgtgatgtttgagcaaggtcccccatctaattacaaaaagtatgaaggagcattttctgtgagtaagggacacctatatataaaaaaagaaatttgatgaagccaaggagacagcaagttttgaacagatcacacagatttatatggaacata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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