GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-19 15:40:40, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_008925959            3438 bp    mRNA    linear   VRT 29-JUL-2019
DEFINITION  PREDICTED: Manacus vitellinus ST6 N-acetylgalactosaminide
            alpha-2,6-sialyltransferase 5 (ST6GALNAC5), mRNA.
ACCESSION   XM_008925959
VERSION     XM_008925959.4
DBLINK      BioProject: PRJNA341382
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Manacus vitellinus (golden-collared manakin)
  ORGANISM  Manacus vitellinus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Passeriformes; Pipridae; Manacus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_021940737.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 19, 2019 this sequence version replaced XM_008925959.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Manacus vitellinus Annotation
                                           Release 103
            Annotation Version          :: 103
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3438
                     /organism="Manacus vitellinus"
                     /mol_type="mRNA"
                     /isolate="BGI_N305"
                     /db_xref="taxon:328815"
                     /chromosome="Unknown"
                     /sex="female"
                     /country="Panama"
     gene            1..3438
                     /gene="ST6GALNAC5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 15 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 1 sample with support for all
                     annotated introns"
                     /db_xref="GeneID:103759556"
     CDS             1..789
                     /gene="ST6GALNAC5"
                     /codon_start=1
                     /product="alpha-N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 5"
                     /protein_id="XP_008924207.3"
                     /db_xref="GeneID:103759556"
                     /translation="
MPTANPELRVSLQPLKMHCKSCALVTSSGHLLGGKQGDRIDEAECVIRMNDAPTRGYGRDVGNKTSLRVIAHSSIQRILRNRHELLNMSHGAVFIFWGPSSYMRRDGKGLVYNNLQLMNQILPRLKVYMISRHKMLQFDDLFKRETGKDRKISNTWLSTGWFTMTIALELCDRINVYGMVPPDFCRDPNHLSVPYHYYEPLGPDECTMYLSHERGRKGSHHRFITEKRVFENWARTFNIHFFQPDWKPEPRTVTRPETKPLL"
     misc_feature    31..597
                     /gene="ST6GALNAC5"
                     /note="Glycosyltransferase family 29 (sialyltransferase);
                     Region: Glyco_transf_29; pfam00777"
                     /db_xref="CDD:425864"
ORIGIN      
atgcctacagctaatcctgagctccgtgtgtctctgcagccgttaaagatgcactgcaagagctgtgccttggtgaccagctccgggcacctcctgggcggcaaacagggcgacaggatcgacgaggccgagtgcgtgatccggatgaacgacgcgcccacccggggctacggaagagacgtcgggaacaaaacgagcctgcgggtcatcgcccactccagcatccagaggatcctgcggaaccgccacgaactcttgaacatgagccacggcgctgtgttcatcttctgggggccgagcagctacatgcgcagggacggcaagggcctggtgtacaacaacctgcagctgatgaaccagatactgccacggttaaaagtgtacatgatttctcgccacaagatgctccagtttgatgacctgttcaaacgggaaaccgggaaggacaggaagatatccaacacttggcttagcacgggctggttcacaatgactatcgcattagagctctgtgacaggataaatgtttatggcatggtgccaccggatttctgcagggatcctaaccatctttcagtaccttatcattactatgaacctctgggacctgacgagtgcacaatgtacctttcccacgagcggggccgcaaggggagccaccaccggttcatcacagagaaacgagtcttcgagaactgggcgcggacattcaacatccacttcttccagccagactggaaaccagagccacgcactgtgacccgccccgagaccaaaccgctgctctgagggggggacacacgaggccacagtcacagtcaccttctgtaccagcctttggacctcctgggacagcactgcaacccggaggggaaggggaacagggtctgcagctgggaactgcagcagcagtcaggaagctgtgatggaggagcagcacataccaagagtactttctgttgaactgtcgcctttttgggccacctgactccctgtgtgtgtacgtgatttgtgaacaacaactcgggtgtcgttaacggatggttaattcattacggcttttttaagtacaacgccactggattttcatagtgaaaacttacagtatttatttaatggaggtttttatgcaacctaggccagtatttttctaattcacagttatgtggttgtttatctttcataatctttcaaatgcaaagttaatattgctgatggtttgaaaggcctagccttttatttataaaattcgtttgaaatatataattctatatagcatgtaattaatatttgatcaggaaatgttgcatttcttctaaaaaatttgggctctgttccagcctaaagcctttaatggcaagagtggtcccatgtgcagatccagctcactttacattctgacatctcatgttaatatgaaaacggtagtgaaaattctgtttgatattaatgtgcatttgctgctgtgctatcaagctgctgttttttaaataggggtgggaggaaggagggcaaacaaaatttatcaaaaaaacccaaaaccccactggctatggcagcgtgcttctcagtgaagacaccaggctgaggctggaggggttgtgttctgtcatttgtactcttgcaagaggctgacagggaccctcctgaggcaacagactacaaaccaggccacaactgctggaaacaacacgaccaaatttctggaatgaagaagttaaactgctaggtactacaatagcatccatacttgccagaaagatcacaacactgcacctgcaaaaatctctgccttacgcagttccaagatcatcactgagctcagagattgtggatcacgttgaagctgggctgtgaaaagagttccccaagtacagagttgtcctcttgaaaagagcaaagttaaactttgcatttttttccatgaagtacctgtatgtgcatggcaagtccctgcgagccaaggggaaggacaacgctcgtgctgtgtaaggaacctcccagtgggaattactgggttacatttggcttgagaataaagaagatttcagttacagtgttatttttgcttttgcttcacaagcctcaaacctctgatttcttcgaagtaatgagtaactattgcatgaaacgtacctcaggtgatggaaggtgtctctcattagacaaatgtgaaagccagaacaaagatactacctttaaacatccaaatccaagaagctgaacctcagaggtgatgcgtagaactgggaccaaactcactatcatttaaacccccttttaacccatggtcttcctctttccaaaactgaatagcaatagctgcagctgcctgacagataccctgatcctctgggaacaaagtgaactgccctgtcaggggcaaaacagtgttacccctgtaacactgtctggacctgaagtgcaggcctccaagagccactgtcctgctgcagccctccccagtatcaaaaagtaagaaactataacctattttgccttaaaagctttatttgggtgttcttcctggtgcacaccgctcagcatacaaacaatgccaattgcttgtaacctgtctctcctcagctggtgttcagctctccctctttcactgatggtgttttattccttccacttgacttcactgcgttctacagaaaccagaatggattctgaactcgtggtaatttgaacatccctttcaacatgtgtactggggcatgtatccagcagatgttgctccaattgatgaaatctgtcaaattgatttacagatcatttctaatgtgactgcaagagatggtacagatcatggtaagtcctctgatgccaccatccttgttttattagtgatataataataaaaagatcctgtcattctaaactagagctcttagtttttccattaattgagggctgcaggatgtgtatgctgtatgtttagttatattattgttaaaaacagatcatttaaagatggattacactggtctacttctagtattcagtagaaacatggggacttgccagactccactgtgttccacacgcttgtttcctgtctgcaagactggtcagcgtcaaacagatcaggtgaagcattaagaatataaaaaacatgggataaactgtcactacatctcctgacttttaagagagcgaagctaaggattgtaacttattccttgttcagcttctgttaataactgtgttcttcctacccccatacacagccagtcttttaaaccaaacaaacccaaactcactttagtctcatcagcctcctgtgatgtttgagcaaggtcccccatctaattacaaaaagtatgaaggagcattttctgtgagtaagggacacctatatataaaaaaagaaatttgatgaagccaaggagacagcaagttttgaacagatcacacagatttatatggaacata
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]