2024-04-29 09:47:30, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008838289 1358 bp mRNA linear ROD 24-JUN-2019 DEFINITION PREDICTED: Nannospalax galili homeobox B8 (Hoxb8), transcript variant X1, mRNA. ACCESSION XM_008838289 VERSION XM_008838289.3 DBLINK BioProject: PRJNA254049 KEYWORDS RefSeq. SOURCE Nannospalax galili (Upper Galilee mountains blind mole rat) ORGANISM Nannospalax galili Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_008342393.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2019 this sequence version replaced XM_008838289.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Nannospalax galili Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1358 /organism="Nannospalax galili" /mol_type="mRNA" /isolate="Female #2095" /db_xref="taxon:1026970" /chromosome="Unknown" /sex="female" /tissue_type="brain" /country="Israel: Animal Facility of the Institute of Evolution, University of Haifa" gene 1..1358 /gene="Hoxb8" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:103738350" CDS 115..846 /gene="Hoxb8" /codon_start=1 /product="homeobox protein Hox-B8 isoform X1" /protein_id="XP_008836511.1" /db_xref="GeneID:103738350" /translation="
MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEAEAQKGDKK"
misc_feature order(553..567,571..573,622..624,640..642,679..681, 685..690,697..702,706..714,718..723) /gene="Hoxb8" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(559..561,568..570,688..690,697..702,709..711) /gene="Hoxb8" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 562..720 /gene="Hoxb8" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" ORIGIN
ccgaaaactgtttatgaactggcatcccttcttcgaaatgtaaagcgaggacctctttaagtggcgcccccaactacagcctccgccgccgccgccgcctcaaaattcaataaaatgagctcttatttcgtcaactcactgttctccaaatacaaaaccggggagtccctgcgccccaattattatgactgcggcttcgcccaagacctgggcggccgacccaccgtggtgtacggtcccagcagcggcggcagcttccagcacccgtcgcaaatccaggagttctaccacgggccgtcgtcgctgtccacggctccctaccagcagaacccgtgcgccgtagcgtgccacggggaccccggcaacttctacggctatgacccgctgcagcgccagagcctgttcggtgcgcaggatccagacctggtgcagtacgcagactgcaagctcgccgccgccagcggcctgggcgaggaggccgagggctcggagcagagcccgtcgcccacacagctcttcccctggatgcgcccgcaagcagccgccggacgcaggcgaggccgacagacctacagccgctaccagaccctggagctggagaaggaattcctatttaatccctatctgactcgcaagaggaggatcgaggtatcgcacgcgctgggactgacagagagacaggtcaaaatctggttccagaaccggagaatgaagtggaaaaaagaaaacaacaaagacaagttccccagtagcaagtgcgagcaggaggagctggagaagcagaagctggagcgggcccccgaggcggccgacgaagccgaggcgcaaaagggtgacaaaaagtaggctccaactgggactgcccgagccggggccgcccgcacgtccgccggtccctcgaccacgccgccgcccgccccccgcctccgagagctccggccccgcgagcggagcctggagctgggcctcccaccgcagagtcccccgccgcgccagtccccgctagtggtagtatctcgtaatagcttctgtgtgtgagctaccgtggatctccttcccttctcccgggggccgggaaaaaaaggattttaagcaaggactccctcgccctgcgagggtgagtggctgcggcctgacagagcccccccctcgcccccgccccgtgtaaaaaaagcctccttgtgcaatggtcttttttccttaaacgtgcttctttgtaatgaccgaggtaccgatttctgctaagttttcccaacaacatgaaactgcctattcacgccgtaattctgtctccctcacctctctctctctctctctctctctctctctctctctctctctctcatcccccctctctc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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