2024-05-19 10:58:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_007710509 735 bp mRNA linear PLN 05-JAN-2024 DEFINITION Bipolaris zeicola 26-R-13 uncharacterized protein (COCCADRAFT_86552), partial mRNA. ACCESSION XM_007710509 VERSION XM_007710509.1 DBLINK BioProject: PRJNA245123 BioSample: SAMN02981449 KEYWORDS RefSeq. SOURCE Bipolaris zeicola 26-R-13 ORGANISM Bipolaris zeicola 26-R-13 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Bipolaris. REFERENCE 1 (bases 1 to 735) AUTHORS Condon,B.J., Leng,Y., Wu,D., Bushley,K.E., Ohm,R.A., Otillar,R., Martin,J., Schackwitz,W., Grimwood,J., MohdZainudin,N., Xue,C., Wang,R., Manning,V.A., Dhillon,B., Tu,Z.J., Steffenson,B.J., Salamov,A., Sun,H., Lowry,S., LaButti,K., Han,J., Copeland,A., Lindquist,E., Barry,K., Schmutz,J., Baker,S.E., Ciuffetti,L.M., Grigoriev,I.V., Zhong,S. and Turgeon,B.G. TITLE Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens JOURNAL PLoS Genet. 9 (1), E1003233 (2013) PUBMED 23357949 REFERENCE 2 (bases 1 to 735) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (29-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 735) AUTHORS Ohm,R.A., Condon,B.J., Leng,Y., Wu,D., Bushley,K.E., Otillar,R., Martin,J., Schackwitz,W., Grimwood,J., MohdZainudin,N., Xue,C., Wang,R., Manning,V.A., Dhillon,B., Tu,Z.J., Steffenson,B.J., Salamov,A., Sun,H., Lowry,S., LaButti,K., Han,J., Copeland,A., Lindquist,E., Barry,K., Schmutz,J., Baker,S., Ciuffetti,L.M., Grigoriev,I.V., Zhong,S., Nordberg,B.G., Cantor,M.N. and Hua,S.X. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (18-SEP-2013) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_006912067). ##Metadata-START## Organism Display Name :: Cochliobolus carbonum 26-R-13 GOLD Stamp ID :: Gr00269 ##Metadata-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..735 /organism="Bipolaris zeicola 26-R-13" /mol_type="mRNA" /strain="26-R-13" /db_xref="taxon:930089" /chromosome="Unknown" gene <1..>735 /locus_tag="COCCADRAFT_86552" /db_xref="GeneID:19152180" CDS 1..735 /locus_tag="COCCADRAFT_86552" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_007708699.1" /db_xref="GeneID:19152180" /db_xref="InterPro:IPR001424" /db_xref="InterPro:IPR006121" /db_xref="JGIDB:Cocca1_86552" /translation="
MTVTAFETIFAVPMTCQSCINDIEGSLHQLSGINKVTANLKEQLVSVEGTAAPSAIVEAIQATGRDAVLRGSGKSDSAAVCILESHAPQVENKVRGLVRMVEVSPGMTIVDLSIRGLSPGTYHATVRESGNISEGPESTGGIWELGQSQKETKACRGIFGTVQVGKGGVGSVFLDKPIHIWEVIGRSIVVAKEQDGKFDKNDADTLVGVIARSAGVWDNDKTVCSCSGKTVWQEREEQRDRGML"
misc_feature 22..699 /locus_tag="COCCADRAFT_86552" /note="copper, zinc superoxide dismutase; Region: PLN02957" /db_xref="CDD:215516" ORIGIN
atgacagtaacagcctttgaaacgatattcgcagtgcccatgacctgtcagtcgtgcatcaacgacatcgagggttccctacatcagttgagtggtatcaacaaagtgactgccaacctcaaggagcaattagtatctgtcgagggcacagcagcaccgtcggccattgtagaggcgattcaagctactgggcgtgatgctgttctccgggggtcgggcaaatcagacagtgcagcggtatgcattctagaatcacacgcgccacaggtggagaacaaggttcgcggcctggtgcgcatggtggaagtttctcctggtatgaccattgtggacttgagtataagagggctgtcacctggaacctatcatgccacagtacgtgagtcgggaaacatttccgagggacctgaatcgactggtgggatttgggaacttggtcagtcacaaaaagagaccaaggcttgtcgaggcatctttggaaccgttcaggttggaaagggtggagtgggatcggtgtttctcgacaagcccatccacatctgggaagtgattgggcgcagcatcgtggttgcgaaagagcaggacggcaagtttgacaagaacgacgcagacacgctagttggggtcattgcacgcagtgcgggcgtatgggataacgacaagacggtgtgttcgtgttctggcaagacggtgtggcaggagcgcgaggagcagcgcgatcgcggtatgctctga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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