2024-05-19 04:16:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_006220002 487 bp mRNA linear MAM 22-NOV-2019 DEFINITION PREDICTED: Vicugna pacos potassium-transporting ATPase alpha chain 2-like (LOC102525282), partial mRNA. ACCESSION XM_006220002 VERSION XM_006220002.3 DBLINK BioProject: PRJNA221631 KEYWORDS RefSeq. SOURCE Vicugna pacos (alpaca) ORGANISM Vicugna pacos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Vicugna. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_021979821.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Nov 22, 2019 this sequence version replaced XM_006220002.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Vicugna pacos Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on the 5' end. FEATURES Location/Qualifiers source 1..487 /organism="Vicugna pacos" /mol_type="mRNA" /isolate="Carlotta (AHFN-0088)" /db_xref="taxon:30538" /chromosome="Unknown" /sex="female" /tissue_type="blood" /dev_stage="adult" gene <1..487 /gene="LOC102525282" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns" /db_xref="GeneID:102525282" CDS <1..459 /gene="LOC102525282" /codon_start=1 /product="potassium-transporting ATPase alpha chain 2-like" /protein_id="XP_006220064.3" /db_xref="GeneID:102525282" /translation="
NGPHFHPSRPRILRHTGDCVGPAPAAHPPPHVSPQDAIVAVTGDGVNDSPALKKADIGIAMGIAGSDAAKNAADMVLLDDNFASIVTGVEEGRLIFDNLKKTIAYTLTKNIAELCPFLIYIIAGLPLPIGTITILFIDLGTDIVSSRKGSRL"
misc_feature <103..>438 /gene="LOC102525282" /note="Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl21460" /db_xref="CDD:451251" ORIGIN
aacgggcctcatttccaccccagccgtcctcgcatcctcagacacactggggactgtgttggtcctgccccagctgctcacccacctcctcacgtgtccccacaggatgctattgtcgctgtgacgggggatggagttaacgactctccggctctaaagaaggcagacattgggattgccatggggatcgcaggttctgacgcagccaaaaatgcagccgacatggtcttgctggatgacaacttcgcgtccatagtcacaggggtggaggaaggccgcctgatctttgacaacctgaagaagactatcgcgtacaccctgaccaagaacatcgctgagctctgcccctttcttatctacatcatcgccggcctgcccctgcccattggcaccattactatcttgttcatcgacctgggcacagatatagtaagtagcaggaaaggcagcaggctctgataacttccccggggtgtcagtctcagag
//
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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