2024-05-19 16:49:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_005507921 2895 bp mRNA linear VRT 24-MAY-2017 DEFINITION PREDICTED: Columba livia ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (ST6GALNAC5), transcript variant X2, mRNA. ACCESSION XM_005507921 VERSION XM_005507921.3 DBLINK BioProject: PRJNA217047 KEYWORDS RefSeq. SOURCE Columba livia (rock pigeon) ORGANISM Columba livia Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Columbiformes; Columbidae; Columba. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004973463.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 24, 2017 this sequence version replaced XM_005507921.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Columba livia Annotation Release 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2895 /organism="Columba livia" /mol_type="mRNA" /db_xref="taxon:8932" /chromosome="Unknown" /sex="male" /tissue_type="blood" /country="Denmark: Vordingborg" /collection_date="13-Jun-2010" /breed="Danish Tumbler" /note="bred by Anders Christiansen, Hans Ove Christiansen, and certified by Danmarks Racedueforeninger" gene 1..2895 /gene="ST6GALNAC5" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns" /db_xref="GeneID:102098304" CDS 84..824 /gene="ST6GALNAC5" /codon_start=1 /product="alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 isoform X2" /protein_id="XP_005507978.1" /db_xref="GeneID:102098304" /translation="
MHCKSCALVTSSGHLLGSKQGDRIDETECVIRMNDAPTRGYGKDVGNKTSVRVIAHSSIQRILRNRNELLNMSHGAVFIFWGPSSYMRRDGKGLVYNNLQLMNQILPQLKAYMISRHKMLQFDDLFKRETGKDRKISNTWLSTGWFTMTIALELCDRINVYGMVPPDFCRDPNHLSVPYHYYEPLGPDECTMYLSHERGRKGSHHRFITEKRVFENWARTFNIHFFQPDWKPEPLTVNHPEVKPVV"
misc_feature 87..632 /gene="ST6GALNAC5" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:425864" ORIGIN
gggaccagcaccacccggcgctccccgtcggggccggtcttctggagggctacatcagcgtcctggagcacaagcctttaaaaatgcactgcaagagttgtgcgttggtaaccagctctggacaccttctgggaagtaaacaaggtgacagaatcgacgagaccgagtgtgtaatacgaatgaacgatgcacctactcgaggttacggaaaagatgttggaaacaaaacgagcgttcgagtcattgcacactccagtattcagaggattttgcggaatcgcaatgaactcttaaatatgagccacggtgctgtgtttatcttctggggtcccagcagctacatgaggagagatggtaaaggcttggtgtataataacctccagctgatgaatcagatactgcctcaattaaaagcatatatgatttctcgccacaagatgcttcaatttgatgacctttttaaacgggaaactgggaaagacaggaagatctccaacacttggcttagcacgggctggttcacaatgactatcgcattagagctctgtgacaggataaatgtttatggcatggtgccaccggatttctgcagggatcctaatcatctttcagtaccttatcattactacgaacctttgggacctgatgaatgcacaatgtacctctcccacgagcggggacgaaagggcagtcatcatcgtttcatcacagagaaacgcgtgtttgagaactgggcgcggacattcaacattcactttttccaaccagactggaaaccagaaccactcactgtaaatcaccctgaggttaaaccggtggtctgagggatggatgcacaagatgggaatcacagtcacctactgtaccagcctttggggtgctggagctgctgggacagcggggcagcctagaggagaagagaaacgggatttgcagctgacaactgcagcaacagtcaggaagttctgatgaaggagaagcgcatatcaagagtacttatgtcaaactgtgcattaatccagtatatcgccttttggggccacctgacttcctgtatgtgtatgtgatttgtgaagaaacttgagtatcattaatggatggttaactcatcatggttttttaaaatacaatgccactgaattttcatagtgaaaacttacggtatttatttaatggaggtttttatgcaacctaggccagtatttttctaattcacagttatgtggttgtttatctttcataatctttcaaatccaaaatgaatattgctgatggtttgaaaggcctagctttttatttataaaactcgtttgaaaagtatgattctatatagcatgtaattaatatttgatctggaaatgttgcatttcttttaaaaattttgggcactgttccagcctaaagcctttaacagcgagaatggtcccatgtgcagatctagctaactttacattccgacatctcatgttaatatgaaaatgatagtgaaaattctgtttgatattaatgtgcatttgctgctgtgctatcaagctgctgttttctaataagaggtgggaggaaggagggcaaagtttatccaaagaagccactggctccagcagcatactctcaattcagagaacagcataagcccggagggttgtgttgctgttttgccttttgtggtcctgcaagaggctgaaggagcaacgcaaaccaggtaacagctgctagaaacaacacgaccaaattcctgaaatcaagaagttacactgctaggtactacaataccagccatactagccaagaagatcacaacgcaaaaatctctgcctttcgctgtcccgagatcatcgctgatctcagagattttggactgcactgaagttgggatgtgaggagagtttcgtgagtacaaaatcatcccctttaaaagagcgaagttacactcgtgggttttttggtgaagtacacgtgcatgacgagtccctgctgaccaaggggacagacagtgctagtgctgtatatggaacctcacagtgtgaattaccgggttacatttggcttgtgaataaagaagatttcagtaacagtcttatttttccttttgcctcaaaaatattgaatctctcgtttccgtgaagtaatcagtaggggtaactattgcatgaaacattatacctcaggtgacaaaaggtctctctcattagatgcatactaaagctagaacaaagatataaccttaaaaggtctaaatccaagaagctgaacttcagaggtgatatgtagaattggcaccaaactcacttaaaacccatggtcttcctctttccaaaactggatagcaatagctggagctgtcctacagataacccagttctggggggaaagaaagtgatctgccctgtcagggggcagaacagtgttacccctgtaacactgcccggacctccaagagccactcgtcttgctgcagccccctccccactagcagagagcaagaaactgtgacctattatgccttaaagttaccttcctggcacacaccgctcagcatacacactgaatgcaaagctctattgccaattccttgtaacctgtctcttgtcagctggtgtttaactcttccccctttcagtgactgttttactccttctgcttgaattcacaacattctacaacgaacagaatggattttgaactaatggaaatgcaaatatccctttcggcatgtgtcctggggtgtgtatccagcatatattgctcaaattgatgaactctgtcaaattgatttacagatcatttctaatgcgactgcaggagatggcacagattgcagcaggtcctctgatgccaccatccttttgttattttgttagtgatacaataataaaaagttcttttcattctaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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