LOCUS       XM_004591092            1599 bp    mRNA    linear   MAM 07-AUG-2023
DEFINITION  PREDICTED: Ochotona princeps homeobox B8 (HOXB8), transcript
            variant X1, mRNA.
ACCESSION   XM_004591092
VERSION     XM_004591092.2
DBLINK      BioProject: PRJNA999375
KEYWORDS    RefSeq.
SOURCE      Ochotona princeps (American pika)
  ORGANISM  Ochotona princeps
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha;
            Ochotonidae; Ochotona.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_080848) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 7, 2023 this sequence version replaced XM_004591092.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030435755.1-RS_2023_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/28/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Ochotona princeps"
                     /mol_type="mRNA"
                     /isolate="mOchPri1"
                     /db_xref="taxon:9978"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="muscle"
                     /dev_stage="adult"
                     /country="USA: Grand Mesa, Colorado"
                     /lat_lon="39.087247 N 107.913514 W"
                     /collection_date="2019-07-17"
                     /collected_by="John R. Demboski, Andrea Marie Carrillo"
     gene            1..1599
                     /gene="HOXB8"
                     /note="homeobox B8; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 17 Proteins"
                     /db_xref="GeneID:101535711"
     CDS             115..846
                     /gene="HOXB8"
                     /codon_start=1
                     /product="homeobox protein Hox-B8 isoform X1"
                     /protein_id="XP_004591149.1"
                     /db_xref="GeneID:101535711"
                     /translation="

MSSYFVNSLFSKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSGGGSFQHPSQIQEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLERAPEAADEGDAQKPEKK"

     misc_feature    order(553..567,571..573,622..624,640..642,679..681,
                     685..690,697..702,706..714,718..723)
                     /gene="HOXB8"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(559..561,568..570,688..690,697..702,709..711)
                     /gene="HOXB8"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    562..720
                     /gene="HOXB8"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
ORIGIN      

ccgaaaactgtttatgaactggcatcccttcttcgaaatgtgaagcgtggacctctttaagtggcgcccccaactacagcctccgccgccgccgccgcctcaaaattcaataaaatgagctcttatttcgtcaactcactgttctccaaatacaaaaccggggagtccctgcgccccaattattatgactgcggcttcgcccaggacctgggcggccgacccaccgtggtgtacggtcccagcggcggcggcagcttccagcacccgtcgcaaatccaggagttctaccacgggccgtcgtcgctgtccacggctccctaccagcagaacccgtgcgccgtggcgtgccacggggaccccggcaacttctacggctacgacccgctgcagcgccagagcctgttcggagcgcaggacccggacctggtgcagtacgcagactgcaagctcgccgccgccagcggcctgggcgaggaggccgagggctcggaacagagcccgtcgcccacacagctcttcccctggatgcgcccgcaagcagccgccggacgcaggcgaggccggcagacttacagccggtaccagaccctggagctggagaaggagttcctatttaacccctatctgactcgcaaacggcggatcgaggtgtcgcacgcgctgggactgacagagagacaggttaaaatctggttccagaaccggaggatgaagtggaaaaaggagaacaacaaagacaagttccccagcagcaaatgcgagcaggaggagctggagaagcagaagctagagcgggccccggaggcagcggacgagggcgacgcgcagaagcctgaaaagaagtagtgggctccagctgggactgccagggccgcggccgcccgcccgcccggcccgcccgagcgcgcccggcccagcgagccagcgggcccggggcctcccaccgcagcgaccccgccgcgccaatccccgctagtggtagtttctcgtaatagcttctgtgtgtgagctgccgtggattctcttcccttctctcgggcccggggctggggggggggtcggaaaaaaaaaagagaaggattttcagcaaggactccctcgccccgcgagggcgagcggctgcggcccaggctgcgcccccctagtgccctcccccttgtaaaaagcttccttgtgcaatgttttttttttctttgaacgtgcttctttgtaatgaccgaggtaccgatttctgctaagttttcccaacaacatgaaactgcctattcacgccgtaattctttctccctccctttctctctctctctctctctctctctctctctctctctctctctcgccgcgtcctcatttcccctcctctgtccccaccgccgcccccaccccccagctcgctggctttctctctctggcttctctcttttcctcccctccttcggtttgacaattttgtcttaagtgtttctcaaaaaaaaaaaaggttaccttagttagcatgcgcgctgtgggcaattgttaaaagtgttcttaggtttactgtgaagagaatgtatcctgtatccgtgaattactttatggggggagggagggagggctaat

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