2024-05-19 03:29:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_001728387 2474 bp mRNA linear PLN 11-OCT-2017 DEFINITION Neurospora crassa OR74A hypothetical protein (NCU11216), mRNA. ACCESSION XM_001728387 VERSION XM_001728387.2 DBLINK BioProject: PRJNA132 BioSample: SAMN02953583 KEYWORDS RefSeq. SOURCE Neurospora crassa OR74A ORGANISM Neurospora crassa OR74A Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora. REFERENCE 1 (bases 1 to 2474) AUTHORS Galagan,J.E., Calvo,S.E., Borkovich,K.A., Selker,E.U., Read,N.D., Jaffe,D., FitzHugh,W., Ma,L.J., Smirnov,S., Purcell,S., Rehman,B., Elkins,T., Engels,R., Wang,S., Nielsen,C.B., Butler,J., Endrizzi,M., Qui,D., Ianakiev,P., Bell-Pedersen,D., Nelson,M.A., Werner-Washburne,M., Selitrennikoff,C.P., Kinsey,J.A., Braun,E.L., Zelter,A., Schulte,U., Kothe,G.O., Jedd,G., Mewes,W., Staben,C., Marcotte,E., Greenberg,D., Roy,A., Foley,K., Naylor,J., Stange-Thomann,N., Barrett,R., Gnerre,S., Kamal,M., Kamvysselis,M., Mauceli,E., Bielke,C., Rudd,S., Frishman,D., Krystofova,S., Rasmussen,C., Metzenberg,R.L., Perkins,D.D., Kroken,S., Cogoni,C., Macino,G., Catcheside,D., Li,W., Pratt,R.J., Osmani,S.A., DeSouza,C.P., Glass,L., Orbach,M.J., Berglund,J.A., Voelker,R., Yarden,O., Plamann,M., Seiler,S., Dunlap,J., Radford,A., Aramayo,R., Natvig,D.O., Alex,L.A., Mannhaupt,G., Ebbole,D.J., Freitag,M., Paulsen,I., Sachs,M.S., Lander,E.S., Nusbaum,C. and Birren,B. TITLE The genome sequence of the filamentous fungus Neurospora crassa JOURNAL Nature 422 (6934), 859-868 (2003) PUBMED 12712197 REFERENCE 2 (bases 1 to 2474) AUTHORS Galagan,J., Henn,M.R., Hood,H., Radford,A., Collins,R.A., Walker,B., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Allen,A.W., Alvarado,L., Arachchi,H.M., Berlin,A., Chapman,S.B., Chen,Z., Gainer-Dewar,J., Gnerre,S., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Ireland,A., Larimer,J.B., McCowan,C., Murphy,C., Pearson,M.D., Poon,T.W., Priest,M., Roberts,A., Saif,S., Shea,T.D., Sisk,P., Shea,T., Sykes,S., Zucker,J., Kodira,C., Bowman,B., Colot,H., Ebbole,D., Rasmussen,C., Baker,C., Kalkman,E., Chen,C.-H., Shi,M., Mathur,R., Lambreghts,R., Collopy,P., Mehra,A., Schweredtfeger,C., Hong,C., Belden,W., Glass,N.L., Borkovich,K., Dunlap,J., Lander,E., Wortman,J., Nusbaum,C., Sachs,M. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform TITLE The Genome Sequence of Neurospora crassa strain OR74A JOURNAL Unpublished REFERENCE 3 (bases 1 to 2474) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-OCT-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 2474) AUTHORS Galagan,J., Henn,M.R., Hood,H., Radford,A., Collins,R.A., Walker,B., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B., Abouelleil,A., Allen,A.W., Alvarado,L., Arachchi,H.M., Berlin,A., Chapman,S.B., Chen,Z., Gainer-Dewar,J., Gnerre,S., Goldberg,J., Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Ireland,A., Larimer,J.B., McCowan,C., Murphy,C., Pearson,M.D., Poon,T.W., Priest,M., Roberts,A., Saif,S., Shea,T.D., Sisk,P., Shea,T., Sykes,S., Zucker,J., Kodira,C., Bowman,B., Colot,H., Ebbole,D., Rasmussen,C., Baker,C., Kalkman,E., Chen,C.-H., Shi,M., Mathur,R., Lambreghts,R., Collopy,P., Mehra,A., Schweredtfeger,C., Hong,C., Belden,W., Glass,N.L., Borkovich,K., Dunlap,J., Lander,E., Wortman,J., Nusbaum,C., Sachs,M. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform TITLE Direct Submission JOURNAL Submitted (30-APR-2013) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_026506). On Feb 23, 2015 this sequence version replaced XM_001728387.1. FEATURES Location/Qualifiers source 1..2474 /organism="Neurospora crassa OR74A" /mol_type="mRNA" /strain="OR74A" /db_xref="taxon:367110" /linkage_group="VI" gene 1..2474 /locus_tag="NCU11216" /db_xref="GeneID:5847785" CDS 1197..1421 /locus_tag="NCU11216" /codon_start=1 /product="hypothetical protein" /protein_id="XP_001728439.2" /db_xref="GeneID:5847785" /translation="
MTCASCANSITNEMKKRDWIQDITVNLLTNSAIVEFTGRENANKLVGEIEDLGFEATLNEETLDLPDDETRSTK"
misc_feature 1197..1367 /locus_tag="NCU11216" /note="Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371" /db_xref="CDD:238219" misc_feature order(1197..1205,1212..1214) /locus_tag="NCU11216" /note="metal-binding site [ion binding]" /db_xref="CDD:238219" ORIGIN
tcgagagggctccctgattgagcatgttgccgccatattccttcttccaaggcggaggcgatttgagatgatagcaagtgctacttatcattctccattacatcacgcaacacttgccgtttcgtcagcaaccgtggatgtgatatgaaggaatacaacgagttggcgacagcaactcgctcattcatcttgccggccttgacaagatacactagttgacagggccggcactaaccacggtaacaccgactccaaccgacctgctggtcccgtcctggcctggtggtcccggcagtcccgaggtggatctcgcgaccctccgaccactgcactgggtcttggcacttgcccaaacggtgaactgccatttctgtgattcgttcacttcgccgggaagccacggccccccggagttgggaggttactgccgtacctcagtccagcaacgactgccgagtggcttccacttcctacccggctgccggttatcattcagacctgcctgaggacggactgtggctgcttggaaggaacttgcaccttccgcttgcccaccgggagcgtgctgaccgcgattgcccggaaatggacatggccatgaggactttcctctttcctcccactcgaatgccctcaattgggctgtgtagttgctttcatgtcgtcacttcccttgacccagaaagagttcgcaggcagttgagggcagtcctgggccatggacactgagtgcttccatcctctctggtcgtgatctccactacctcattcaacccttccgccgtctctctatgaagccagtctcatcatcgtcaatgtcgaccatcctgtcacttctttgatgcaggtacgcactggttgacgtctggtcgagcccggatcagcccccattgaacagcatacttgaactcctccatcccccaaacaaattccgcctttttctcctctctctcccatcaacccattgtcagcatatttttgctacattcctattgttcttctatcttttccttctgtcttgtgcttgatggcttgtgccgtctttgctgttttcataacagcggcttaacttgtgccttgcaccatccctgtactacacacacaagccccagaacatttttgcgtctcgcaaaataactacagagttgacttctgcctgagcgcttcattcccgagctcaactggtttcgggcgggatgacatgtgcgtcttgtgccaactccatcaccaacgagatgaagaagcgggactggatccaagacatcacggtcaaccttctcaccaacagcgcgattgtcgagtttacggggagagaaaacgccaacaagctggtgggagagattgaggatctcgggttcgaagcgacgctcaacgaggagaccttggacctgcctgacgacgagactcgttcgacgaaatgacgtccatgtcaaactgacccatggtcaaagattgactaaggacggctcgttacactcgagaatcaaccgcgaggtctacaagtcattcgaccgagcccacctctgatgaaaccaaatggcagtcagagaaaatgataagagtccggcaggtttgggagcacgacggaccacagcagctgggagagctccactgaaggcgttgtagcgcggtcggtaagctggttagttgccactcgcttgtgagccaacagagcaagcaacgggggatattaccccatcatcttccgacctactctacagcaaccataggcagaatgtggtgtgaatggcaacaaccaccactcacttgcaggcgagggtacagaaccttggggttgggaaacaacttcgctcaacaattttgggttcatgtgaactctcaagcccagttcactcacccctttcttcgcaaccggcataggcccgtagcctctggtctttgatcccggccttgtgattcctcccgccatgttacctgaccgaggataacaagctcatggtcgagaaactgtatggaatcatctggcagggttgcccgaccatctgggatgttgaaagggccatccagttctatgaatcgcaccttaggggaaagcttaccttcatgatggtgagacgaatcggcagacggctgaaatggacatagggatggatggggttgatgattgtttcgaagaagggatggtctgtgccagtggacatgaaagaccatattcaggatcagagcgaatgtatgtctggaagccggaaaggcgatggagacgaggacctggatggcgactttggggactatctaatgggcgactctgaaccttgatgaatcggacgacctgttcaagccagacgtggacatcagtcccaccggtctgttaggtctgttcagtggcggtggtcaagacaacaaaacgccacagccatcatctagcgaccgtcagaaatgtcgcatctacagcaaagtttaccatgacaacaccccatctccgtcctttcctgttggatctctaagacctctta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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