GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-05-19 03:29:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_001728387            2474 bp    mRNA    linear   PLN 11-OCT-2017
DEFINITION  Neurospora crassa OR74A hypothetical protein (NCU11216), mRNA.
ACCESSION   XM_001728387
VERSION     XM_001728387.2
DBLINK      BioProject: PRJNA132
            BioSample: SAMN02953583
KEYWORDS    RefSeq.
SOURCE      Neurospora crassa OR74A
  ORGANISM  Neurospora crassa OR74A
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae;
            Neurospora.
REFERENCE   1  (bases 1 to 2474)
  AUTHORS   Galagan,J.E., Calvo,S.E., Borkovich,K.A., Selker,E.U., Read,N.D.,
            Jaffe,D., FitzHugh,W., Ma,L.J., Smirnov,S., Purcell,S., Rehman,B.,
            Elkins,T., Engels,R., Wang,S., Nielsen,C.B., Butler,J.,
            Endrizzi,M., Qui,D., Ianakiev,P., Bell-Pedersen,D., Nelson,M.A.,
            Werner-Washburne,M., Selitrennikoff,C.P., Kinsey,J.A., Braun,E.L.,
            Zelter,A., Schulte,U., Kothe,G.O., Jedd,G., Mewes,W., Staben,C.,
            Marcotte,E., Greenberg,D., Roy,A., Foley,K., Naylor,J.,
            Stange-Thomann,N., Barrett,R., Gnerre,S., Kamal,M., Kamvysselis,M.,
            Mauceli,E., Bielke,C., Rudd,S., Frishman,D., Krystofova,S.,
            Rasmussen,C., Metzenberg,R.L., Perkins,D.D., Kroken,S., Cogoni,C.,
            Macino,G., Catcheside,D., Li,W., Pratt,R.J., Osmani,S.A.,
            DeSouza,C.P., Glass,L., Orbach,M.J., Berglund,J.A., Voelker,R.,
            Yarden,O., Plamann,M., Seiler,S., Dunlap,J., Radford,A.,
            Aramayo,R., Natvig,D.O., Alex,L.A., Mannhaupt,G., Ebbole,D.J.,
            Freitag,M., Paulsen,I., Sachs,M.S., Lander,E.S., Nusbaum,C. and
            Birren,B.
  TITLE     The genome sequence of the filamentous fungus Neurospora crassa
  JOURNAL   Nature 422 (6934), 859-868 (2003)
   PUBMED   12712197
REFERENCE   2  (bases 1 to 2474)
  AUTHORS   Galagan,J., Henn,M.R., Hood,H., Radford,A., Collins,R.A.,
            Walker,B., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B.,
            Abouelleil,A., Allen,A.W., Alvarado,L., Arachchi,H.M., Berlin,A.,
            Chapman,S.B., Chen,Z., Gainer-Dewar,J., Gnerre,S., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Ireland,A., Larimer,J.B., McCowan,C., Murphy,C., Pearson,M.D.,
            Poon,T.W., Priest,M., Roberts,A., Saif,S., Shea,T.D., Sisk,P.,
            Shea,T., Sykes,S., Zucker,J., Kodira,C., Bowman,B., Colot,H.,
            Ebbole,D., Rasmussen,C., Baker,C., Kalkman,E., Chen,C.-H., Shi,M.,
            Mathur,R., Lambreghts,R., Collopy,P., Mehra,A., Schweredtfeger,C.,
            Hong,C., Belden,W., Glass,N.L., Borkovich,K., Dunlap,J., Lander,E.,
            Wortman,J., Nusbaum,C., Sachs,M. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     The Genome Sequence of Neurospora crassa strain OR74A
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 2474)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2017) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   4  (bases 1 to 2474)
  AUTHORS   Galagan,J., Henn,M.R., Hood,H., Radford,A., Collins,R.A.,
            Walker,B., Young,S.K., Zeng,Q., Gargeya,S., Fitzgerald,M., Haas,B.,
            Abouelleil,A., Allen,A.W., Alvarado,L., Arachchi,H.M., Berlin,A.,
            Chapman,S.B., Chen,Z., Gainer-Dewar,J., Gnerre,S., Goldberg,J.,
            Griggs,A., Gujja,S., Hansen,M., Howarth,C., Imamovic,A.,
            Ireland,A., Larimer,J.B., McCowan,C., Murphy,C., Pearson,M.D.,
            Poon,T.W., Priest,M., Roberts,A., Saif,S., Shea,T.D., Sisk,P.,
            Shea,T., Sykes,S., Zucker,J., Kodira,C., Bowman,B., Colot,H.,
            Ebbole,D., Rasmussen,C., Baker,C., Kalkman,E., Chen,C.-H., Shi,M.,
            Mathur,R., Lambreghts,R., Collopy,P., Mehra,A., Schweredtfeger,C.,
            Hong,C., Belden,W., Glass,N.L., Borkovich,K., Dunlap,J., Lander,E.,
            Wortman,J., Nusbaum,C., Sachs,M. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform
  TITLE     Direct Submission
  JOURNAL   Submitted (30-APR-2013) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NC_026506).
            
            On Feb 23, 2015 this sequence version replaced XM_001728387.1.
FEATURES             Location/Qualifiers
     source          1..2474
                     /organism="Neurospora crassa OR74A"
                     /mol_type="mRNA"
                     /strain="OR74A"
                     /db_xref="taxon:367110"
                     /linkage_group="VI"
     gene            1..2474
                     /locus_tag="NCU11216"
                     /db_xref="GeneID:5847785"
     CDS             1197..1421
                     /locus_tag="NCU11216"
                     /codon_start=1
                     /product="hypothetical protein"
                     /protein_id="XP_001728439.2"
                     /db_xref="GeneID:5847785"
                     /translation="
MTCASCANSITNEMKKRDWIQDITVNLLTNSAIVEFTGRENANKLVGEIEDLGFEATLNEETLDLPDDETRSTK"
     misc_feature    1197..1367
                     /locus_tag="NCU11216"
                     /note="Heavy-metal-associated domain (HMA) is a conserved
                     domain of approximately 30 amino acid residues found in a
                     number of proteins that transport or detoxify heavy
                     metals, for example, the CPx-type heavy metal ATPases and
                     copper chaperones. HMA domain...; Region: HMA; cd00371"
                     /db_xref="CDD:238219"
     misc_feature    order(1197..1205,1212..1214)
                     /locus_tag="NCU11216"
                     /note="metal-binding site [ion binding]"
                     /db_xref="CDD:238219"
ORIGIN      
tcgagagggctccctgattgagcatgttgccgccatattccttcttccaaggcggaggcgatttgagatgatagcaagtgctacttatcattctccattacatcacgcaacacttgccgtttcgtcagcaaccgtggatgtgatatgaaggaatacaacgagttggcgacagcaactcgctcattcatcttgccggccttgacaagatacactagttgacagggccggcactaaccacggtaacaccgactccaaccgacctgctggtcccgtcctggcctggtggtcccggcagtcccgaggtggatctcgcgaccctccgaccactgcactgggtcttggcacttgcccaaacggtgaactgccatttctgtgattcgttcacttcgccgggaagccacggccccccggagttgggaggttactgccgtacctcagtccagcaacgactgccgagtggcttccacttcctacccggctgccggttatcattcagacctgcctgaggacggactgtggctgcttggaaggaacttgcaccttccgcttgcccaccgggagcgtgctgaccgcgattgcccggaaatggacatggccatgaggactttcctctttcctcccactcgaatgccctcaattgggctgtgtagttgctttcatgtcgtcacttcccttgacccagaaagagttcgcaggcagttgagggcagtcctgggccatggacactgagtgcttccatcctctctggtcgtgatctccactacctcattcaacccttccgccgtctctctatgaagccagtctcatcatcgtcaatgtcgaccatcctgtcacttctttgatgcaggtacgcactggttgacgtctggtcgagcccggatcagcccccattgaacagcatacttgaactcctccatcccccaaacaaattccgcctttttctcctctctctcccatcaacccattgtcagcatatttttgctacattcctattgttcttctatcttttccttctgtcttgtgcttgatggcttgtgccgtctttgctgttttcataacagcggcttaacttgtgccttgcaccatccctgtactacacacacaagccccagaacatttttgcgtctcgcaaaataactacagagttgacttctgcctgagcgcttcattcccgagctcaactggtttcgggcgggatgacatgtgcgtcttgtgccaactccatcaccaacgagatgaagaagcgggactggatccaagacatcacggtcaaccttctcaccaacagcgcgattgtcgagtttacggggagagaaaacgccaacaagctggtgggagagattgaggatctcgggttcgaagcgacgctcaacgaggagaccttggacctgcctgacgacgagactcgttcgacgaaatgacgtccatgtcaaactgacccatggtcaaagattgactaaggacggctcgttacactcgagaatcaaccgcgaggtctacaagtcattcgaccgagcccacctctgatgaaaccaaatggcagtcagagaaaatgataagagtccggcaggtttgggagcacgacggaccacagcagctgggagagctccactgaaggcgttgtagcgcggtcggtaagctggttagttgccactcgcttgtgagccaacagagcaagcaacgggggatattaccccatcatcttccgacctactctacagcaaccataggcagaatgtggtgtgaatggcaacaaccaccactcacttgcaggcgagggtacagaaccttggggttgggaaacaacttcgctcaacaattttgggttcatgtgaactctcaagcccagttcactcacccctttcttcgcaaccggcataggcccgtagcctctggtctttgatcccggccttgtgattcctcccgccatgttacctgaccgaggataacaagctcatggtcgagaaactgtatggaatcatctggcagggttgcccgaccatctgggatgttgaaagggccatccagttctatgaatcgcaccttaggggaaagcttaccttcatgatggtgagacgaatcggcagacggctgaaatggacatagggatggatggggttgatgattgtttcgaagaagggatggtctgtgccagtggacatgaaagaccatattcaggatcagagcgaatgtatgtctggaagccggaaaggcgatggagacgaggacctggatggcgactttggggactatctaatgggcgactctgaaccttgatgaatcggacgacctgttcaagccagacgtggacatcagtcccaccggtctgttaggtctgttcagtggcggtggtcaagacaacaaaacgccacagccatcatctagcgaccgtcagaaatgtcgcatctacagcaaagtttaccatgacaacaccccatctccgtcctttcctgttggatctctaagacctctta
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]