2024-05-07 00:57:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_203359 5828 bp mRNA linear MAM 19-DEC-2022 DEFINITION Bos taurus dicer 1, ribonuclease III (DICER1), mRNA. ACCESSION NM_203359 VERSION NM_203359.1 KEYWORDS RefSeq. SOURCE Bos taurus (cattle) ORGANISM Bos taurus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos. REFERENCE 1 (bases 1 to 5828) AUTHORS Burrola-Barraza,M.E., Hernandez-Seanez,R., Barcelo-Fimbres,M., Rodriguez-Almeida,F.A., Gonzalez-Rodriguez,E., Garcia-Quinonez,S., Grado-Ahuir,J.A. and Moreno-Brito,V. TITLE Dicer gene expression during early bovine embryo development JOURNAL Mol Reprod Dev 78 (9), 622 (2011) PUBMED 21823189 REMARK GeneRIF: Studied Dicer gene expression during early bovine embryo development.An increase in Dicer expression was detected in the mature oocytes sampled (P<0.05), implying that gene repression occurs during meiosis II. REFERENCE 2 (bases 1 to 5828) AUTHORS Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marcais G, Roberts M, Subramanian P, Yorke JA and Salzberg SL. TITLE A whole-genome assembly of the domestic cow, Bos taurus JOURNAL Genome Biol 10 (4), R42 (2009) PUBMED 19393038 REFERENCE 3 (bases 1 to 5828) AUTHORS Ishiwata H, Katsuma S, Kizaki K, Patel OV, Nakano H, Takahashi T, Imai K, Hirasawa A, Shiojima S, Ikawa H, Suzuki Y, Tsujimoto G, Izaike Y, Todoroki J and Hashizume K. TITLE Characterization of gene expression profiles in early bovine pregnancy using a custom cDNA microarray JOURNAL Mol Reprod Dev 65 (1), 9-18 (2003) PUBMED 12658628 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY386968.1. ##Evidence-Data-START## Transcript exon combination :: AY386968.1, GGVG01110265.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN03145412, SAMN03145413 [ECO:0000350] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..5828 /organism="Bos taurus" /mol_type="mRNA" /db_xref="taxon:9913" /chromosome="21" /map="21" gene 1..5828 /gene="DICER1" /gene_synonym="Dicer" /note="dicer 1, ribonuclease III" /db_xref="BGD:BT29583" /db_xref="GeneID:337871" /db_xref="VGNC:VGNC:28063" misc_feature 14..16 /gene="DICER1" /gene_synonym="Dicer" /note="upstream in-frame stop codon" CDS 17..5788 /gene="DICER1" /gene_synonym="Dicer" /EC_number="3.1.26.3" /note="Dicer1, Dcr-1 homolog; dicer 1, ribonuclease type III; ribonuclease III" /codon_start=1 /product="endoribonuclease Dicer" /protein_id="NP_976235.1" /db_xref="BGD:BT29583" /db_xref="GeneID:337871" /db_xref="VGNC:VGNC:28063" /translation="
MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNQEFTKHQVLIMTCYVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTASILNGKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKHIKHEQEELHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDDDDVFPPYVLRPEDGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRESYPRPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWKKSIDSKSFISIANSSSAENENYCKHSTIVVPENAAHQGANRTSPLENHDQMSVNCRTLFSESPGKLQIEVSTDLTAINGLSYNKSLANGSYDLANRDFCQGNHLNYYKQEIPVQPTTSYPIQNLYNYENQPKPSDECTLLSNKYLDGNANTSTSDGSPVTAAVPGTTETGEAPPDRTASEQSPSPGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNGLPPGYVVNQDKSNTEKWEKDEMTKDCMLANGKLDDDFEEEEEEEEDLMWRAHKEDADDEDDFLEYDQEHIKFIDNMLMGSGAFVKKISLSPFSATDSAYEWKMPKKSSLGSLPFSSDFEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKAMCPTRENFTSQQKNLSGSRAAASGAGYRASVLKDLEYGCLKIPPRCMFDHPEADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPEITKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS"
misc_feature 140..733 /gene="DICER1" /gene_synonym="Dicer" /note="DEXH-box helicase domain of endoribonuclease Dicer; Region: DEXHc_dicer; cd18034" /db_xref="CDD:350792" misc_feature order(140..151,158..160,209..232,353..355,542..544, 635..637) /gene="DICER1" /gene_synonym="Dicer" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350792" misc_feature order(317..322,389..394,467..469,473..478,485..487, 560..568) /gene="DICER1" /gene_synonym="Dicer" /note="nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:350792" misc_feature 539..550 /gene="DICER1" /gene_synonym="Dicer" /note="propagated from UniProtKB/Swiss-Prot (Q6TUI4.3); Region: DECH box" misc_feature 782..1801 /gene="DICER1" /gene_synonym="Dicer" /note="propagated from UniProtKB/Swiss-Prot (Q6TUI4.3); Region: Required for interaction with PRKRA and TARBP2. /evidence=ECO:0000250" misc_feature 827..1111 /gene="DICER1" /gene_synonym="Dicer" /note="Partner-binding domain of the endoribonuclease Dicer; Region: Dicer_PBD; cd15903" /db_xref="CDD:277191" misc_feature order(842..847,854..856,860..865,1040..1045,1052..1057, 1064..1066,1073..1078,1085..1087) /gene="DICER1" /gene_synonym="Dicer" /note="Trbp binding interface [polypeptide binding]; other site" /db_xref="CDD:277191" misc_feature 1130..1708 /gene="DICER1" /gene_synonym="Dicer" /note="C-terminal helicase domain of the endoribonuclease Dicer; Region: SF2_C_dicer; cd18802" /db_xref="CDD:350189" misc_feature 1244..1315 /gene="DICER1" /gene_synonym="Dicer" /note="propagated from UniProtKB/Swiss-Prot (Q6TUI4.3); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 1253..1255 /gene="DICER1" /gene_synonym="Dicer" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site" misc_feature 1259..1261 /gene="DICER1" /gene_synonym="Dicer" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site" misc_feature order(1361..1369,1577..1579,1634..1636,1640..1642) /gene="DICER1" /gene_synonym="Dicer" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:350189" misc_feature order(1589..1591,1595..1597,1670..1672,1676..1678) /gene="DICER1" /gene_synonym="Dicer" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 1901..2167 /gene="DICER1" /gene_synonym="Dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 2669..3037 /gene="DICER1" /gene_synonym="Dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order(2858..2860,2897..2899,2915..2917,2927..2929, 2981..2983,3005..3007,3011..3013) /gene="DICER1" /gene_synonym="Dicer" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239209" misc_feature 3059..3061 /gene="DICER1" /gene_synonym="Dicer" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site" misc_feature 3494..3496 /gene="DICER1" /gene_synonym="Dicer" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site" misc_feature 3752..3889 /gene="DICER1" /gene_synonym="Dicer" /note="propagated from UniProtKB/Swiss-Prot (Q6TUI4.3); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 3902..>4180 /gene="DICER1" /gene_synonym="Dicer" /note="Ribonuclease III family; Region: RIBOc; smart00535" /db_xref="CDD:197778" misc_feature order(3953..3958,3965..3970,3977..3979,3986..3991, 3998..4003,4010..4018,4046..4048) /gene="DICER1" /gene_synonym="Dicer" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238333" misc_feature 4397..4399 /gene="DICER1" /gene_synonym="Dicer" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site" misc_feature 4421..4423 /gene="DICER1" /gene_synonym="Dicer" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q8R418; propagated from UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site" misc_feature 4427..4429 /gene="DICER1" /gene_synonym="Dicer" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site" misc_feature 5015..5773 /gene="DICER1" /gene_synonym="Dicer" /note="dsRNA-specific ribonuclease [Transcription]; Region: Rnc; COG0571" /db_xref="CDD:223644" misc_feature 5435..5437 /gene="DICER1" /gene_synonym="Dicer" /note="Important for activity. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (Q6TUI4.3); other site" misc_feature 5621..5623 /gene="DICER1" /gene_synonym="Dicer" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from UniProtKB/Swiss-Prot (Q6TUI4.3); phosphorylation site" ORIGIN
ttgaaacactggatgaatgaaaagccctgctttgcaacccctcagcatggcaggcctgcagctcatgacccctgcttcctcaccaatgggtcctttctttggactgccatggcaacaagaagcaattcatgataacatttatacgccaagaaaatatcaggttgaactgcttgaagcagctctggatcataataccatagtctgtttaaacactggctcagggaagacgtttattgcagtactactcactaaagagctgtcttatcagatcaggggagacttcaacagaaatggcaaaaggacggtgttcttggtcaactctgcaaaccaggttgcccaacaagtgtcagctgtcagaactcactcagatctcaaggtcggggaatactcaaacctagaagtaagtgcatcttggacaaaagagaaatggaaccaagagtttactaagcaccaggttctcattatgacctgctatgtcgccttgaatgttttgaaaaatggttacttatcactgtcagacattaaccttttggtgtttgatgagtgtcatcttgcaatcctagaccacccctaccgagaaattatgaagctttgtgaaaattgtccatcatgtcctcgtattttgggactaactgcttccattttaaatgggaaatgtgatccagaggaattggaagagaagattcagaaactggagaaaattcttaagagtaatgctgaaactgcaactgacttggtggtcttagacagatatacttctcagccatgtgagattgtggtagactgtggaccatttactgacagaagtgggctttatgaaagactgctgatggagttagaagaagcacttaattttatcaatgactgtaacatatctgtacattcaaaagaaagagattctactttaatttctaaacagatactctcagactgccgtgcggtcctggttgtcctgggaccctggtgtgccgataaagtagctggaatgatggtcagagagctgcagaaacacatcaaacatgagcaggaggagctgcaccggaagtttctgttgttcacagacactttcctacggaaaatccacgccctgtgtgaagagcacttctcccctgcctcgcttgacctgaagtttgtcactcctaaagtaataaagctgctcgagatcttacgcaaatacaaaccgtatgagcggcagcagtttgaaagcgtggagtggtataataataggaaccaggataattacgtgtcctggagcgattctgaggatgacgaggaagatgaagagattgaagagaaagaaaagccagagacaaattttccttctccgtttaccaacattttgtgtggaattatttttgtggaaagaagatacacagccgtggtcttaaacagattgataaaggaagctggcaaacaagatccagagctggcttacatcagcagcaattttataactggacatggcatcggaaagaatcagcctcggaacaaacagatggaagcggaattcagaaaacaggaagaggtacttaggaaatttcgagcacatgaaaccaacctgcttattgcaacaagtattgtggaggagggtgttgacataccgaaatgcaacttggtggttcgtttcgatctgcccacagagtatcgatcctacgttcagtccaagggaagagcgagggcacccatctctaattatgtaatgttagcagacacagataaaataaagagttttgaagaagaccttaaaacatacaaagctattgaaaagatcttgcgaaacaaatgttccaagtcggttgataccggggaggccgacacggagcccgtggtggatgacgacgatgttttcccaccgtatgtgctgaggcctgaggacggtccccgcgtcacgatcaacacggccattgggcacgtcaacagatactgtgctagattaccaagtgatccgtttactcatctggctcctaaatgtagaacccgagagttgcctgatggtacattttattcaactctttatctgccaattaactcacctcttcgagcctccattgttggtcccccaatgagctgcattcggttggctgaaagagtcgtggctctcatttgctgtgaaaaactgcacaaaattggcgaactggatgaccatttgatgccagttgggaaggagactgttaaatatgaggaagagctggatttacacgatgaagaagagaccagtgttccaggaagaccaggttccacaaaacgaagacagtgctacccaaaagcaattccagaatgtttgagggagagctaccccaggcctggtcagccctgttacctgtacgtgatcggaatggtcctgacgacacctttacctgatgagctcaacttcagaaggcggaagctctacccccctgaggacaccacaagatgctttggaatactgacagccaagcccatacctcagatcccacactttcctgtgtacacgcgctctggagaggtgaccatatctattgagttgaagaagtccggcttcacgttatctctgcaaatgcttgagttgatcacaaggcttcaccagtatatattctcacatattcttcggcttgaaaaacctgcactagaatttaaacccacagacgcggactcagcctactgcgttctacctcttaatgttgttaatgactccagcactttggacattgactttaaattcatggaagatatcgagaaatctgaagctcgaataggcattcccagcacaaagtattcaaaagaaactccttttgttttcaaattagaagattaccaagatgcagttatcattccaagataccgcaattttgatcagcctcatcgattttatgtcgctgacgtgtacactgatcttacccccctgagtaaatttccttcccctgagtatgaaacgtttgcggagtattataaaacaaagtataaccttgacctgaccaatctcaaccagccgctgctggacgtggaccacacgtcttcacgactcaatcttttgacacctcgtcatttgaatcagaaggggaaagctctccctctgagcagtgctgagaagaggaaagccaagtgggagagcctgcagaataagcagatactggttccagaactctgtgctatacatccaattccagcatcactgtggagaaaagccgtttgtctcccgagcatactttaccgccttcactgccttctgactgcagaggagctcagagcccagacggccagcgacgctggtgtgggagtcaggtcacttcctgtggattttagataccctaacttagacttcgggtggaaaaaatctatcgacagcaaatctttcatctcaattgctaactcctcttcagctgaaaatgagaattactgtaagcacagcacaattgtcgtccctgaaaatgctgcacatcaaggtgctaatagaacctcccctctagaaaatcatgaccaaatgtctgtgaactgcagaacgttgttcagcgagtcacctggtaagctccaaattgaagtttcaacagatctgacagcaattaatggtctttcttacaataaaagtcttgccaatggcagttacgatttagctaacagagacttttgccaaggaaaccatctgaattactacaagcaggaaatacctgtacaaccaactacctcatatcccattcagaatttatacaattacgagaaccagcccaagcccagcgatgaatgtactctactgagtaataaataccttgatggaaatgctaacacatctacctcagatggaagtcccgtgacggctgccgtgcctggtactacagagactggggaggcgcccccggacaggacggcttctgagcagagcccttctcctgggtactcctcgaggacgcttggccccaaccctgggctcattcttcaggctttgaccctttcgaacgctagtgatggatttaacctggagcggctcgagatgcttggcgactccttcctcaagcatgccatcaccaccgtatctctttctgcacttatcctggatgcgcatgagggccgcctttcctacatgagaagcaaaaaggtcagcaactgtaatctgtatcggcttggaaaaaagaaggggctgcccagccgcatggtggtgtccatatttgacccccctgtgaatgggcttcctcctggttacgtagtaaatcaagacaaaagtaacacagagaaatgggaaaaagatgaaatgacaaaagactgcatgttggctaatggcaaactggacgatgacttcgaggaggaggaagaggaggaggaggacctgatgtggagggctcacaaggaggatgcggacgatgaggacgacttcctggaatacgatcaggagcacatcaagttcatagataacatgctgatggggtcaggggctttcgtcaagaaaatctctctttctcctttttctgccaccgattctgcatacgagtggaaaatgcccaaaaagtcctcccttggtagtctgccattctcatccgattttgaggatttcgactacagctcctgggatgcgatgtgctatctggatccgagcaaagccgttgaagaggatgactttgtggtggggttctggaatccatcagaagaaaactgtggtgtggacacagggaagcagtccatctcttacgacctgcacaccgagcagtgcattgccgacaaaagcatagccgactgtgtggaagccctgctgggctgctatttaaccagctgtggcgagagggctgctcagcttttcctctgttcgctggggctgaaggtgctcccggtaattaaaaggactgatcgggaaaaggccatgtgcccgaccagggagaatttcaccagccaacaaaagaacctttcagggagccgtgcggctgcctctggagccggctaccgagcctctgtgttgaaagacttggagtatgggtgtttgaagatccccccgaggtgtatgtttgatcaccccgaggcagaccggacactgcgtcacctgatctcgggttttgaaaatttcgaaaagaaaatcaactacagattcaagaataaggcttaccttctacaggcttttacacacgcctcctaccactacaatacgatcacggattgttaccagcgcttagaattcctgggagatgcaattttggactacctcataactaagcacctttatgaagacccacggcagcactccccaggggtcctgactgacctgcgctctgctctggtcaacaataccatcttcgcgtctttggctgtgaagtatgactaccacaagtactttaaggccgtttctcccgagctcttccatgtcatcgacgatttcgtgcagtttcagctcgagaagaacgaaatgcaaggaatggattctgagcttaggagatccgaggaggatgaagagaaggaagaggatattgaagttccaaaggccatgggggatattttcgagtcactcgcgggcgccatttacatggacagcgggatgtcgctggagacggtctggcaggtgtactatcccatgatgcggccgctgatcgaaaaattttctgcaaatgtgccccgttcccctgtgcgagaattgcttgaaatggaaccagaaattaccaaattcagcccagctgagagaacctacgatggcaaggtcagagtcaccgtggaagtggtcgggaaggggaagttcaaaggcgttggccgaagttacaggattgccaagtctgcagcagcaagaagagccctgcgaagcctcaaagctaatcaacctcaggttcccaatagctgaaaacccctttttaaattaaaaaaaaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]